Topic: ngs-pipeline Goto Github
Some thing interesting about ngs-pipeline
Some thing interesting about ngs-pipeline
ngs-pipeline,a shiny frontend for the nextflow-fastp pipeline
User: angelovangel
ngs-pipeline,A simple fastp-MultiQC nextflow pipeline
User: angelovangel
ngs-pipeline,BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Organization: barski-lab
Home Page: https://demo.biowardrobe.com/
ngs-pipeline,microRNA validation using Spark framework
Organization: bioinfouqam
ngs-pipeline,scripts associated with yam genome assembly
User: bpucker
ngs-pipeline,WDL tasks for commonly used BFX tools
Organization: chopdgd
ngs-pipeline,CSBB - Computational Suite For Bioinformaticians and Biologists
User: csbbcompbio
ngs-pipeline,A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
Organization: cvua-rrw
Home Page: https://cvua-rrw.github.io/FooDMe
ngs-pipeline,ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns
Organization: digbiolab
ngs-pipeline,command line and desktop tool for microbial variant calling
User: dmnfarrell
ngs-pipeline,Pipelines for NGS data preprocessing by the Bock lab and friends
Organization: epigen
ngs-pipeline,A collection of awesome things regarding all omics.
User: flowhub-team
ngs-pipeline,DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage
User: hevmarriott
ngs-pipeline,FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
Organization: hivdb
ngs-pipeline,Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
Organization: hughes-genome-group
ngs-pipeline,CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.
User: hyunhwan-jeong
ngs-pipeline,Protein Analysis and Classifier Toolkit
User: jklesmith
ngs-pipeline,Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
User: jlescroart
ngs-pipeline,SARS-CoV-2 Genome Assembler
User: jnarayan81
ngs-pipeline,Multisample DNAseq variant calling pipeline for use in diagnostics
Organization: lumc
ngs-pipeline,process and analyze paired-end ATAC-Seq data
Organization: maxsonbraunlab
ngs-pipeline,CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
User: mdraminski
ngs-pipeline,Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
User: mehdimerbah
ngs-pipeline,
User: mkarlik93
ngs-pipeline,A fast, easy way to present complex bioinformatics pipelines to biologists
Organization: ncbi-hackathons
ngs-pipeline,A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Organization: ncbi
ngs-pipeline,Project Manager for NGS data analysis
Organization: ncbi
ngs-pipeline,A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/germline/
ngs-pipeline,A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/structural/
ngs-pipeline,Pip package for CRISPR-Cas9 screen analysis
User: niekwit
ngs-pipeline,Tools for NGS data analysis
User: niekwit
ngs-pipeline,Snakemake workflow for transposable element RNA-Seq using TEtranscripts
User: niekwit
ngs-pipeline,Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
User: praneet1988
ngs-pipeline,:horse: CLinically Okay Metagenomic Pipeline :horse:
User: rcs333
ngs-pipeline,Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"
User: renatosantos98
ngs-pipeline,Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
User: rusalkaguy
ngs-pipeline,CWL pipelines for the Sentieon tools
Organization: sentieon
ngs-pipeline,Run Sentieon pipelines on Google Cloud Platform
Organization: sentieon
Home Page: https://cloud.google.com/genomics/docs/tutorials/sentieon
ngs-pipeline,This is dockerize "somatic paired-WES(Normal-Tumor) pipeline" which is refer to GATK best practice.
User: shanghungshih
ngs-pipeline,SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
Organization: solida-core
ngs-pipeline,AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
User: tbersez
Home Page: https://www6.paca.inra.fr/gafl/
ngs-pipeline,Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
User: tc-hewitt
ngs-pipeline,Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
User: v-z
Home Page: https://github.com/V-Z/hybseq-scripts
ngs-pipeline,Sondovaฤ is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
User: v-z
Home Page: https://github.com/V-Z/sondovac/wiki/
ngs-pipeline,Reconstruction and analysis of viral and host genomes at multi-organ level
Organization: viromelab
ngs-pipeline,An Efficient Design of a Next Generation Sequencing pipeline with Apache Spark
User: vzzarr
Home Page: https://github.com/Vzzarr/NGS-SparkGATK/wiki
ngs-pipeline,A workflow tool to automatically run a bioinformatic pipeline
User: weizhongli
ngs-pipeline,A flexible, automation and pragmatic workflow tool to process the NGS data.
User: zhanghao-njmu
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