Topic: nextflow-pipelines Goto Github
Some thing interesting about nextflow-pipelines
Some thing interesting about nextflow-pipelines
nextflow-pipelines,A nextflow pipeline for performing bacterial RNA-Seq data analysis.
User: adamd3
nextflow-pipelines,A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
User: adamd3
nextflow-pipelines,Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.
User: ajodeh-juma
nextflow-pipelines,A nextflow pipeline for the analysis of 16S amplicon data built around RExMap
User: angelovangel
nextflow-pipelines,A simple fastp-MultiQC nextflow pipeline
User: angelovangel
nextflow-pipelines,Bayesian phylogenetic analysis
User: asadprodhan
Home Page: https://github.com/asadprodhan/phyloTree
nextflow-pipelines,Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
User: aveglia
nextflow-pipelines,A repository with usage examples of various pipeline and workflow orchestration tools
Organization: azavea
nextflow-pipelines,This directory contains material that I've used in different courses
Organization: biodata-fun
nextflow-pipelines,This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data
Organization: biodata-fun
nextflow-pipelines,This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Organization: bu-isciii
nextflow-pipelines,Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
Organization: cfsan-biostatistics
nextflow-pipelines,cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
Organization: cfsan-biostatistics
nextflow-pipelines,HLA typing pipelines in nextflow
Organization: cobinet
nextflow-pipelines,Demultiplexing pipeline for sequencing data
User: csawye01
nextflow-pipelines,RNA-Seq pipeline
Organization: dolphinnext
Home Page: https://dolphinnext.umassmed.edu/index.php?np=1&id=437
nextflow-pipelines,An hello world pipeline to test nextflow installations.
Organization: eipm
nextflow-pipelines,Filter a VCF to discard false positive variants
User: elowy01
nextflow-pipelines,modules for processing and analyzing single cell data using Nextflow
Organization: gaitilab
Home Page: https://gaitilab.github.io/nf-processes/
nextflow-pipelines,My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
User: gavinf97
nextflow-pipelines,Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
Organization: ifremer-bioinformatics
Home Page: https://gitlab.ifremer.fr/bioinfo/workflows/orson
nextflow-pipelines,This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data
Organization: igsr
Home Page: http://www.internationalgenome.org/
nextflow-pipelines,Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
Organization: janeliascicomp
nextflow-pipelines,A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
User: jbris
Home Page: https://jbris.github.io/nextflow-graph-machine-learning/
nextflow-pipelines,Working through NextFlow tutorials. See https://github.com/nextflow-io/training
User: jbris
nextflow-pipelines,From QC to summary statistics
User: jianhua-wang
nextflow-pipelines,Testing different pipelines using Nextflow
User: jtorrex
nextflow-pipelines,A nextflow workflow to build referenceseeker DBs on the fly
Organization: lgi-onehealth
nextflow-pipelines,EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.
Organization: lieberinstitute
Home Page: http://research.libd.org/SPEAQeasyWorkshop2020/
nextflow-pipelines,A simple pipeline to test some basic nextflow features.
User: manuelesimi
nextflow-pipelines,Nextflow pipeline to assemble genomes from nanopore reads.
User: nschan
nextflow-pipelines,This workflow for molecular dynamics simulation of proteins
Organization: open-science-community-saudi-arabia
nextflow-pipelines,Nextflow Scripts/Workflows for Bioinformatics
User: rajanbit
nextflow-pipelines,WtP: Phage identification via nextflow and docker or singularity
User: replikation
Home Page: https://mult1fractal.github.io/wtp-documentation/
nextflow-pipelines,A Genome Annotation workflow for Eukaryotes
Organization: scc-lzu
nextflow-pipelines,A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Organization: sydney-informatics-hub
nextflow-pipelines,Nextflow pipeline for targeted sequencing data.
User: thesergeypixel
nextflow-pipelines,A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
User: vickylaram
nextflow-pipelines,Scripts for ARIBA-based gene detection
User: wanyuac
nextflow-pipelines, Tools for processing HIC data.
User: zhqu1148980644
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