Topic: bioinformatics-pipeline Goto Github
Some thing interesting about bioinformatics-pipeline
Some thing interesting about bioinformatics-pipeline
bioinformatics-pipeline,Compacted and colored de Bruijn graph construction and querying
Organization: algbio
bioinformatics-pipeline,Predict plasmids from uncorrected long read data
User: andrewjpage
bioinformatics-pipeline,From annotated genomes to metabolic screening in large scale microbiotas
Organization: aureme
Home Page: https://metage2metabo.readthedocs.io
bioinformatics-pipeline,Compute over Data framework for public, transparent, and optionally verifiable computation
Organization: bacalhau-project
Home Page: https://docs.bacalhau.org
bioinformatics-pipeline,A pipeline for high-quality bacterial genome construction using ONT sequencing
Organization: beatsonlab-microbialgenomics
bioinformatics-pipeline,A collection of reusable WDL tasks. Category:Other
Organization: biowdl
Home Page: https://biowdl.github.io/tasks/
bioinformatics-pipeline,Phigaro is a scalable command-line tool for predicting phages and prophages
User: bobeobibo
bioinformatics-pipeline,Bystro genetic analysis (annotation, filtering, statistics)
Organization: bystrogenomics
bioinformatics-pipeline,V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Organization: cbg-ethz
Home Page: https://cbg-ethz.github.io/V-pipe/
bioinformatics-pipeline,Infectious Disease Sequencing Platform
Organization: chanzuckerberg
Home Page: https://czid.org/
bioinformatics-pipeline,A lightweight and powerful Julia package for computational pipelines and workflows.
User: cihga39871
bioinformatics-pipeline,Python toolkit for building restartable pipelines
Organization: databio
Home Page: http://pypiper.databio.org
bioinformatics-pipeline,Whole Genome Sequencing analysis, WGS analysis
User: flowhub-team
bioinformatics-pipeline,Variant Calling Pipeline Using GATK4 and Nextflow
Organization: gencorefacility
bioinformatics-pipeline,A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
Organization: genomiqueens
Home Page: http://www.outils.genomique.biologie.ens.fr/eoulsan2
bioinformatics-pipeline,A language and runtime for distributed, incremental data processing in the cloud
Organization: grailbio
bioinformatics-pipeline,Cluster single cells and analyze cell clade relationships with colorful visualizations.
User: gregoryschwartz
Home Page: https://gregoryschwartz.github.io/too-many-cells/
bioinformatics-pipeline,RNA sequencing analysis software
User: guyteichman
Home Page: https://guyteichman.github.io/RNAlysis
bioinformatics-pipeline,TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Organization: hillerlab
bioinformatics-pipeline,Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Organization: jetbrains-research
bioinformatics-pipeline,A modular annotation tool for genomic variants
Organization: karchinlab
bioinformatics-pipeline,ATAC-seq and DNase-seq processing pipeline
Organization: kundajelab
bioinformatics-pipeline,GCP for Bioinformatics Researchers
User: lynnlangit
Home Page: https://www.youtube.com/playlist?list=PL4Q4HssKcxYvcixWS08UFaYIH7y4IAV0z
bioinformatics-pipeline,An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Organization: maayanlab
Home Page: http://bit.ly/2g4hCe7
bioinformatics-pipeline,A bioinformatics pipeline to analyze mtDNA from NGS data
Organization: mitongs
Home Page: http://sourceforge.net/projects/mtoolbox/?source=navbar
bioinformatics-pipeline,NGLess: NGS with less work
Organization: ngless-toolkit
Home Page: https://ngless.embl.de
bioinformatics-pipeline,Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
User: nickjcroucher
Home Page: http://nickjcroucher.github.io/gubbins/
bioinformatics-pipeline,AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
User: nsalomonis
Home Page: http://www.altanalyze.org
bioinformatics-pipeline,Ploidy agnostic phasing pipeline and algorithm
User: omaroakheart
bioinformatics-pipeline,Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
Organization: pyladies-brazil
bioinformatics-pipeline,Analysis Pipeline for Single Cell ATAC-seq
User: r3fang
bioinformatics-pipeline,A fully automated gene annotator from RNA-Seq expression data
User: sagnikbanerjee15
bioinformatics-pipeline,Package for fetching metadata and downloading data from SRA/ENA/GEO
User: saketkc
Home Page: https://saketkc.github.io/pysradb
bioinformatics-pipeline,Antimicrobial Resistance Identification By Assembly
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/ariba/
bioinformatics-pipeline,Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Artemis
bioinformatics-pipeline,Improve the quality of a denovo assembly by scaffolding and gap filling
Organization: sanger-pathogens
bioinformatics-pipeline,A tool to circularize genome assemblies
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/circlator/
bioinformatics-pipeline,de novo virus assembler of Illumina paired reads
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/iva/
bioinformatics-pipeline,Rapid large-scale prokaryote pan genome analysis
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Roary
bioinformatics-pipeline,Finds SNP sites from a multi-FASTA alignment file
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/snp-sites/
bioinformatics-pipeline,Robust, flexible and resource-efficient pipelines using Go and the commandline
Organization: scipipe
Home Page: https://scipipe.org
bioinformatics-pipeline,A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
User: shujiahuang
bioinformatics-pipeline,An opinionated Cromwell orchestration manager.
Organization: stjudecloud
Home Page: https://stjudecloud.github.io/oliver
bioinformatics-pipeline,Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
User: twoxes
bioinformatics-pipeline,GREIN : GEO RNA-seq Experiments Interactive Navigator
Organization: uc-bd2k
Home Page: https://shiny.ilincs.org/grein
bioinformatics-pipeline,Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
User: urmi-21
bioinformatics-pipeline,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
bioinformatics-pipeline,A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
User: yangwu91
bioinformatics-pipeline,HemTools: a collection of NGS pipelines and bioinformatic analyses
User: yichaoou
Home Page: https://hemtools.readthedocs.io
bioinformatics-pipeline,WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
User: yupenghe
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