Topic: chip-seq Goto Github
Some thing interesting about chip-seq
Some thing interesting about chip-seq
chip-seq,A toolkit for NGS analysis with Python
User: afrendeiro
Home Page: http://ngs-toolkit.readthedocs.io
chip-seq,TFregulomeR reveals transcription factorsβ context-specific features and functions
User: benoukraflab
chip-seq,(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
Organization: biocore-ntnu
Home Page: http://bioepic.readthedocs.io
chip-seq,Summer school course materials collection
Organization: bioinformatics-core-shared-training
Home Page: https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2018/.
chip-seq,ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
User: bohdan-khomtchouk
chip-seq,Statistical and computational analysis of the human genome
User: boulderrinnlab
chip-seq,Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Organization: costalab
Home Page: https://reg-gen.readthedocs.io/
chip-seq,ChIP-seq analysis notes from Ming Tang
User: crazyhottommy
chip-seq,a snakemake pipeline to process ChIP-seq files from GEO or in-house
User: crazyhottommy
chip-seq,Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
User: darwinawardwinner
chip-seq,CWL based Bioinformatics Workflows
Organization: datirium
chip-seq,Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
User: eblancoga
chip-seq,A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Organization: epigen
Home Page: https://epigen.github.io/dea_limma/
chip-seq,A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Organization: epigen
Home Page: https://epigen.github.io/enrichment_analysis/
chip-seq,Pipelines for NGS data preprocessing by the Bock lab and friends
Organization: epigen
chip-seq,A collection of Galaxy-related training material
Organization: galaxyproject
Home Page: https://training.galaxyproject.org
chip-seq,Using combined evidence from replicates to evaluate ChIP-seq peaks
Organization: genometric
Home Page: https://genometric.github.io/MSPC/
chip-seq,deepStats: a stastitical toolbox for deeptools and genomic signals
User: gtrichard
chip-seq,Publication quality NGS track plotting
User: harbourlab
chip-seq,7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
User: ibn-salem
Home Page: https://ibn-salem.github.io/sevenC
chip-seq,Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Organization: ifb-elixirfr
Home Page: https://ifb-elixirfr.github.io/EBAII/
chip-seq,AnaLysis routines for ePigenomicS data - π« Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
chip-seq,Bioinformatics library in Kotlin
Organization: jetbrains-research
chip-seq,AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
User: jingwyang
Home Page: https://github.com/jingwyang/AnceTran
chip-seq,Extract Sequence from Genome According to Annotation File
User: junjunlab
Home Page: https://github.com/junjunlab/BioSeqUtils
chip-seq,AQUAS TF and histone ChIP-seq pipeline
Organization: kundajelab
chip-seq,MACS -- Model-based Analysis of ChIP-Seq
Organization: macs3-project
Home Page: https://macs3-project.github.io/MACS/
chip-seq,Customizable workflows based on snakemake and python for the analysis of NGS data
Organization: maxplanck-ie
Home Page: http://snakepipes.readthedocs.io
chip-seq,Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Organization: miraldilab
chip-seq,ChIP-seq peak-calling, QC and differential analysis pipeline.
Organization: nf-core
Home Page: https://nf-co.re/chipseq
chip-seq,Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Organization: nf-core
Home Page: https://nf-co.re/differentialabundance
chip-seq,The ChIP-Seq peak calling algorithm using convolution neural networks
User: odb9402
chip-seq,Go / Golang Bioinformatics Library
User: pbenner
chip-seq,Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Organization: pinellolab
chip-seq,ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Organization: remap-cisreg
Home Page: http://remap-cisreg.github.io/ReMapEnrich
chip-seq, API for HOMER in R for Genomic Analysis using Tidy Conventions
User: robertamezquita
Home Page: https://robertamezquita.github.io/marge/
chip-seq,A robust model for quantitative comparison of ChIP-Seq data sets.
Organization: shao-lab
Home Page: http://manorm.readthedocs.io/
chip-seq,Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
Organization: soedinglab
Home Page: https://bammmotif.mpibpc.mpg.de/
chip-seq,PARE: a computational method to Predict Active Regulatory Elements
User: spundhir
Home Page: http://spundhir.github.io/PARE
chip-seq,A Python package for fast operations on 1-dimensional genomic signal tracks
Organization: thejacksonlaboratory
chip-seq,MAnorm2 for Normalizing and Comparing ChIP-seq Samples
User: tushiqi
chip-seq,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
chip-seq,Regulatory Element Locus Intersection (RELI) Analysis
Organization: weirauchlab
chip-seq,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
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