Topic: methylation Goto Github
Some thing interesting about methylation
Some thing interesting about methylation
methylation,R package for DNA methylation analysis
User: al2na
Home Page: https://bioconductor.org/packages/release/bioc/html/methylKit.html
methylation,Bayesian Clustering and Imputation of Single Cell Methylomes
User: andreaskapou
methylation,Missing value imputation in methylation data R package
User: annaplaksienko
Home Page: https://academic.oup.com/bioinformatics/article/40/1/btae001/7517106
methylation,Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
Organization: aryeelab
methylation,JBrowse plugin for methylation related things
User: bhofmei
methylation,Detecting methylation using signal-level features from Nanopore sequencing reads
User: bioinfomaticscsu
methylation,Deep neural networks for predicting CpG methylation
User: cangermueller
methylation,A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.
User: chanzhou
Home Page: https://github.com/chanzhou/AutoCirc
methylation,Important papers relating to the biology of cell free DNA
User: christacaggiano
methylation, A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
Organization: compepigen
Home Page: https://compepigen.github.io/methylbert/
methylation,A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.
Organization: cozygene
methylation,Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
User: dohlee
methylation,A (mostly) universal methylation extractor for BS-seq experiments.
User: dpryan79
methylation,ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
Organization: encode-dcc
methylation,Bacterial Epigenomics Analysis SuiTe
Organization: fanglab
methylation,A tool to map bisulfite converted sequence reads and determine cytosine methylation states
User: felixkrueger
Home Page: http://felixkrueger.github.io/Bismark/
methylation,Python-based preprocessing software for Illumina methylation arrays
Organization: foxotech
methylation,A Snakemake pipeline for RRBS data analysis
User: ftabaro
methylation,An information-theoretic pipeline for methylation analysis of WGBS data
User: garrettjenkinson
methylation,EpiMethEx (Epigenetic Methylation and Expression), a R package to perform a large-scale integrated analysis by cyclic correlation analyses between methylation and gene expression data.
User: giupardeb
methylation,Differential methylation: Easy, Fast, Identification and ANnoTation
User: hhg7
methylation,Bioinformatics Pipeline
User: huazou
Home Page: https://zouhua.top/
methylation,Bioinformatics library in Kotlin
Organization: jetbrains-research
methylation,A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Organization: jlab-code
methylation,Signal-level algorithms for MinION data
User: jts
methylation,Toolkit for concretely describing non-canonical DNA, RNA, and proteins
Organization: karrlab
Home Page: https://www.bpforms.org
methylation,R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
User: kdkorthauer
methylation,:chart: The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
User: kmezhoud
methylation,Mapping pipeline for snmC-seq based technologies.
User: lhqing
Home Page: https://hq-1.gitbook.io/mc/
methylation,Python package to analyze DNA methylation data
User: liguowang
methylation,
User: mehelmy
methylation,Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
User: mtisza1
methylation,A bioinformatics tool for working with modified bases
Organization: nanoporetech
Home Page: https://nanoporetech.com/
methylation,Methylation/modified base calling separated from basecalling.
Organization: nanoporetech
Home Page: https://nanoporetech.com
methylation,SCREW: A Reproducible Workflow for Single-Cell Epigenomics
Organization: ncbi-hackathons
methylation,tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
User: nloyfer
methylation,BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
User: nuttylogic
methylation,An open platform which provides information about miRNAs and genes from different popular databases
Organization: omics-datascience
Home Page: https://revistas.unlp.edu.ar/IDTS/article/view/12122
methylation,A battery of methylation tools for PacBio HiFi reads
Organization: pacificbiosciences
methylation,pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing.
User: paradoxdruid
methylation,Detecting methylation using signal-level features from Nanopore sequencing reads of plants
User: pengni
methylation,A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing
User: reese3928
Home Page: https://bioconductor.org/packages/release/bioc/html/methylGSA.html
methylation,Arioc: GPU-accelerated DNA short-read alignment
User: rwilton
methylation,An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
User: semenko
methylation,bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Organization: sing-group
Home Page: http://www.sing-group.org/bicycle
methylation,A workflow based on QTLtools to run cis- and trans-QTL analyses.
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/QTLToolKit/
methylation,Targeted Amplicon Bisulfite Sequencing Analysis Tool
User: tadkeys
methylation,MethPhaser: methylation-based haplotype phasing of human genomes
Organization: treangenlab
Home Page: https://www.nature.com/articles/s41467-024-49588-0
methylation,DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
Organization: wglab
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