felixkrueger Goto Github PK
Name: Felix Krueger
Type: User
Company: Altos Labs, Cambridge Institute of Science
Twitter: FelixNmnKrueger
Location: Cambridge, UK
Blog: https://altoslabs.com/
Name: Felix Krueger
Type: User
Company: Altos Labs, Cambridge Institute of Science
Twitter: FelixNmnKrueger
Location: Cambridge, UK
Blog: https://altoslabs.com/
A set of build scripts to generate AWS instances ready to run our training courses
Pipeline for processing VDJ-Seq data
Conda recipes for the bioconda channel.
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
This is a side-project of Bismark whose aim is to output multiply mapping read positions without any of the methylation specific features.
Project page for the Cambridge Bioinformatics Hackathon, @Craik Marshall Building, Downing Site, Sept 25-27, 2017
Course Files for Complete Python 3 Bootcamp Course on Udemy
This script reads paired-end BAM files, and deduplicates alignments based purely on exact matches of the first 50bp of both reads.
Pipeline to fetch metadata and raw FastQ files from public and private databases. Modifying pigz execution
The scripts for doing automated run processing from our sequencing facility
A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)
Estimate locus specific human LINE-1 expression.
A minimal Nextflow pipeline that works with @nf-core modules.
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Test data for MultiQC. See https://github.com/ewels/MultiQC
fine
The set of NGS processing pipelines used at Babraham
Repository to host tool-specific module files for the Nextflow DSL2 community!
A simple workflow to get alignments done. Testing subworkflow setup
A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project
A collection of repetitive things...
Custom script(s) for the processing of files for single-cell repeat analysis
A generic sequence retrieval tool for genomic coordinates
A simple Bisulfite FastQ Read Simulator (BiQRS)
minimal WGS workflow with nf-core tools 2.9dev
conda test
Trying to get Slamdunk to work on CentOS 6
Allele-specific alignment sorting
A tool to extract subsets of data from the tagged BAM file generated by CellRanger
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.