Topic: dna Goto Github

👇 Here are 745 public repositories matching this topic...

airi-institute / gena_lm
dna,GENA-LM is a transformer masked language model trained on human DNA sequence.
Organization: airi-institute
Home Page: https://www.biorxiv.org/content/10.1101/2023.06.12.544594
dna genomes language-model t2t

apriha / lineage
dna,tools for genetic genealogy and the analysis of consumer DNA test results
User: apriha
dna genes genetics genealogy snps chromosomes genotype bioinformatics ancestry

apriha / snps
dna,tools for reading, writing, merging, and remapping SNPs
User: apriha
snps dna chromosomes bioinformatics vcf

bebop / poly
dna,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
synthetic-biology synbio genetic-engineering molecular-biology bioengineering computational-biology bioinformatics dna fasta genbank

bingmann / cobs
dna,COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
User: bingmann
Home Page: https://panthema.net/cobs
cobs index k-mers dna

biojulia / bio.jl
dna,[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Organization: biojulia
Home Page: http://biojulia.dev
bioinformatics biojulia biojulia-packages biology deprecated dna genomics

biologyguy / buddysuite
dna,Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
User: biologyguy
bioinformatics python phylogenetics dna protein alignment command-line workflow biology

biopython / biopython
dna,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
python bioinformatics genomics biopython protein protein-structure sequence-alignment phylogenetics dna

bjornfjohansson / pydna
dna,Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
User: bjornfjohansson
bioinformatics biopython python anaconda dna gel jupyter-notebooks biology pydna jupyter-notebook

broadinstitute / catch
dna,A package for designing compact and comprehensive capture probe sets.
Organization: broadinstitute
science genomics genome viral sequencing ngs dna bioinformatics metagenomics covid-19

broadinstitute / gatk
dna,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
genomics spark science dna ngs sequencing genome bioinformatics gatk

chanzuckerberg / shasta
dna,[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Organization: chanzuckerberg
dna sequencing assembly nanopore pacbio long-read de-novo

cslarsen / arv
dna,A fast 23andMe DNA parser and inferrer for Python
User: cslarsen
23andme dna python genome bioinformatics snpedia snps

cslarsen / dna-traits
dna,A fast 23andMe genome text file parser, now superseded by arv
User: cslarsen
23andme python snps health-report snpedia dna genomics bioinformatics

danielbiegler / visualize-dna-sequences
dna,Visualizing DNA Sequences via Javascript
User: danielbiegler
Home Page: https://danielbiegler.github.io/visualize-dna-sequences/
visualization visual dna javascript bootstrap bootstrap4 html html5 sequence visualizing

dib-lab / khmer
dna,In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Organization: dib-lab
Home Page: http://khmer.readthedocs.io/
dna k-mer python bloom-filter count-min-sketch graph-traversal bioinformatics

felixkrueger / bismark
dna,A tool to map bisulfite converted sequence reads and determine cytosine methylation states
User: felixkrueger
Home Page: http://felixkrueger.github.io/Bismark/
bioinformatics dna methylation

galaxyproject / galaxy
dna,Data intensive science for everyone.
Organization: galaxyproject
Home Page: https://galaxyproject.org
bioinformatics workflow genomics science sequencing ngs dna usegalaxy pipeline workflow-engine

google / deepsomatic
dna,DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Organization: google
bioinformatics deep-learning dna genome genomics machine science sequencing somatic-mutations somatic-variants

google / deepvariant
dna,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
tensorflow deep-neural-network genomics science dna sequencing genome bioinformatics deep-learning ngs

google / nucleus
dna,Python and C++ code for reading and writing genomics data.
Organization: google
genomics tensorflow dna bioinformatics

igordot / genomics
dna,A collection of scripts and notes related to genomics and bioinformatics
User: igordot
bioinformatics genomics sequencing illumina fasta fastq gtf vcf nanopore dna

igordot / sns
dna,Analysis pipelines for genomic sequencing data
User: igordot
Home Page: https://igordot.github.io/sns
bioinformatics rna-seq wgs wes illumina sequencing atac-seq wgbs rrbs analysis

instadeepai / nucleotide-transformer
dna,🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2
genomics deep-learning language-model nucleotide transformer dna

josiahseaman / fluentdna
dna,FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
User: josiahseaman
dna visualization fasta sequencing bioinformatics bioinformatics-tool fasta-sequences chain-alignment liftover fluent

jvrana / benchling-api
dna,A python wrapper for the benchling api
User: jvrana
Home Page: https://klavinslab.github.io/benchling-api/index
api-wrapper dna-sequences dna

kennethreitz / context
dna,Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
User: kennethreitz
Home Page: https://context.kennethreitz.org/
genome human-genome kennethreitz 23andme promethease geneology gedcom gedcom-files ancestry dna

kirillkryukov / naf
dna,Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
User: kirillkryukov
Home Page: http://kirill-kryukov.com/study/naf/
compression file-format dna rna protein fasta fastq

lattice-automation / seqfold
dna,nucleic acid folding
Organization: lattice-automation
dna rna folding rna-structure-prediction dna-structure-prediction structure-prediction rna-folding dna-folding

lattice-automation / seqviz
dna,a JavaScript DNA, RNA, and protein sequence viewer
Organization: lattice-automation
Home Page: https://tools.latticeautomation.com/seqviz
dna igem synthetic-biology vector plasmid rna biology protein

lightdock / lightdock
dna,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein protein-structure protein-protein-interaction protein-docking swarm-intelligence glowworm-swarm-optimization protein-dna-interactions peptides dna docking

lmdu / pyfastx
dna,a python package for fast random access to sequences from plain and gzipped FASTA/Q files
User: lmdu
Home Page: https://pyfastx.readthedocs.io
fasta python biology dna genome assembly sequence fastq bioinformatics

magics-lab / dnabert_2
dna,[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Organization: magics-lab
dataset dna dna-processing dna-training genome genome-analysis language-model covid promoter promoter-analysis

marrink-lab / polyply_1.0
dna,Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
Organization: marrink-lab
macromolecules martini polymers md coarse-graining dna carbohydrates atomistic-simulations hacktoberfest

mdshw5 / pyfaidx
dna,Efficient pythonic random access to fasta subsequences
User: mdshw5
Home Page: https://pypi.python.org/pypi/pyfaidx
python bioinformatics fasta indexing dna protein genomics bgzf samtools

mozack / abra2
dna,ABRA2
User: mozack
splice-junctions indels dna rna realigner ngs abra

nextstrain / nextclade
dna,Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Organization: nextstrain
Home Page: https://clades.nextstrain.org
clade clades coronavirus covid covid-19 dna ncov neherlab nextstrain research

nf-core / hlatyping
dna,Precision HLA typing from next-generation sequencing data
Organization: nf-core
Home Page: https://nf-co.re/hlatyping
hla hla-typing immunology dna rna optitype personalized-medicine nf-core nextflow workflow

nosvagor / dotfiles
dna, 🍙 my Personalized Development Environment [PDE]
User: nosvagor
archlinux eww neovim dotfiles linux kitty pde zsh config firefox

openhero / gblastn
dna,G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
User: openhero
bioinformatics high-performance high-performance-computing gpu ncbi-blast blastn nvidia cuda dna dna-sequences dna-alignment

pallada-92 / dna-3d-engine
dna,3d engine implementation in DNA code!
User: pallada-92
Home Page: https://observablehq.com/@pallada-92/3d-engine-in-dna-code
dna piperine strand-displacement chemical-reaction-networks chemical-kinetics chemical-reactions in-vitro molecular-programming molecular-biology biology

plashchynski / awesome-genetics
dna,A curated list of awesome personal genomics software, libraries, and educational resources.
User: plashchynski
genetics genomics 23andme ancestry geneology bioinformatics dna health snpedia consumer-dna-test

ratschlab / metagraph
dna,Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Organization: ratschlab
Home Page: http://metagraph.ethz.ch
graph dna alignment metagenomics search assembly

rosettacommons / pyrosetta.notebooks
dna,Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Organization: rosettacommons
Home Page: https://rosettacommons.github.io/PyRosetta.notebooks/
pyrosetta google-colab jupyter-notebook protein-design protein-structure-prediction protein-folding protein-docking dna rna-structure-prediction rosetta

samtools / htsjdk
dna,A Java API for high-throughput sequencing data (HTS) formats.
Organization: samtools
Home Page: http://samtools.github.io/htsjdk/
genomics sequencing dna ngs bam cram sam fasta vcf java-api

songlab-cal / gpn
dna,Genomic Pre-trained Network
Organization: songlab-cal
Home Page: https://doi.org/10.1073/pnas.2311219120
dna language-model variant-effect-prediction

supportintelligence / icewater
dna,16,432 Free Yara rules created by
Organization: supportintelligence
Home Page: http://icewater.io
cluster dna malware-analysis threat yara

ugeneunipro / ugene
dna,UGENE is free open-source cross-platform bioinformatics software
Organization: ugeneunipro
Home Page: http://ugene.net
ugene bioinformatics ngs dna workflow pipeline science cpp qt5 sequencing cross-platform msa

verisimilitudex / dnanalyzer
dna,Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
User: verisimilitudex
Home Page: http://www.dnanalyzer.org/
amino-acid-sequence artificial-intelligence bioinformatics dna dna-sequencing genomics hacktoberfest machine-learning metagenomics protein-sequences regulatory-elements sequencing transcriptomics

vgteam / vg
dna,tools for working with genome variation graphs
Organization: vgteam
Home Page: https://biostars.org/tag/vg/
variation-graph graph genome-graph genomics dna