Hi there, I have a problem with v1.26.2. It segfaults on exit (GUI).
I tried it on two different machines, same behaviour. Are there any changes to the way I build it necessary? Am I missing something?
$ LANG=C ugene -ui
getrlimit(RLIMIT_NOFILE) failed
ATTENTION: default value of option force_s3tc_enable overridden by environment.
/usr/lib/ugene/ugene: line 69: 26303 Segmentation fault (core dumped) "$dirname/$appname" "${params[@]}"
Exception with code C++ exception - Segmentation fault: address not mapped.
Stack dump: /tmp/ugene_crashes/7d827e57-819c-92c5-170a6063-6e336cef.dmp
Operation system: Linux
CPU Info:
Vendor :AuthenticAMD��
logical cpus: 4
cpu cores: 4
hyper-threads: false
Memory Info: 3388Mb
UGENE version: 1.26.2 x64
UUID: {c51e34ea-da38-4fc0-be7b-71716338be7a}
ActiveWindow: None
Log:
AppMemory: 3306Mb;
[16:41:02.553] [Tasks] Promoting task {'BlastN' external tool search task} to 'Finished'
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[16:41:02.553] [Tasks] Promoting task {'BlastP' external tool search task} to 'Prepared'
[16:41:02.553] [Tasks] Promoting task {BlastP validate task} to 'Running'
[16:41:02.553] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.556] [Tasks] Promoting task {BlastP validate task} to 'Finished'
[16:41:02.556] [Tasks] Promoting task {BlastX validate task} to 'Prepared'
[16:41:02.556] [Tasks] Promoting task {'BlastX' external tool search task} to 'Prepared'
[16:41:02.556] [Tasks] Promoting task {BlastX validate task} to 'Running'
[16:41:02.556] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.559] [Tasks] Promoting task {BlastX validate task} to 'Finished'
[16:41:02.559] [Tasks] Promoting task {TBlastN validate task} to 'Prepared'
[16:41:02.559] [Tasks] Promoting task {'TBlastN' external tool search task} to 'Prepared'
[16:41:02.559] [Tasks] Promoting task {TBlastN validate task} to 'Running'
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[16:41:02.562] [Tasks] Promoting task {TBlastX validate task} to 'Prepared'
[16:41:02.562] [Tasks] Promoting task {'TBlastX' external tool search task} to 'Prepared'
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[16:41:02.562] [Tasks] Promoting task {'TBlastX' external tool search task} to 'Running'
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[16:41:02.565] [Tasks] Promoting task {'TBlastX' external tool search task} to 'Finished'
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[16:41:02.565] [Tasks] Promoting task {RPSBlast validate task} to 'Prepared'
[16:41:02.565] [Tasks] Promoting task {'RPSBlast' external tool search task} to 'Prepared'
[16:41:02.565] [Tasks] Promoting task {RPSBlast validate task} to 'Running'
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[16:41:02.568] [Tasks] Promoting task {'RPSBlast' external tool search task} to 'Finished'
[16:41:02.568] [Tasks] Promoting task {RPSBlast validate task} to 'Finished'
[16:41:02.568] [Tasks] Promoting task {BlastDBCmd validate task} to 'Prepared'
[16:41:02.568] [Tasks] Promoting task {'BlastDBCmd' external tool search task} to 'Prepared'
[16:41:02.568] [Tasks] Promoting task {BlastDBCmd validate task} to 'Running'
[16:41:02.568] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.571] [Tasks] Promoting task {'BlastDBCmd' external tool search task} to 'Finished'
[16:41:02.571] [Tasks] Promoting task {BlastDBCmd validate task} to 'Finished'
[16:41:02.571] [Tasks] Promoting task {CAP3 validate task} to 'Prepared'
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[16:41:02.571] [Tasks] Promoting task {CAP3 validate task} to 'Running'
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[16:41:02.573] [Tasks] Promoting task {'CAP3' external tool search task} to 'Finished'
[16:41:02.574] [Tasks] Promoting task {CAP3 validate task} to 'Finished'
[16:41:02.574] [Tasks] Promoting task {Bowtie aligner validate task} to 'Prepared'
[16:41:02.574] [Tasks] Promoting task {'Bowtie aligner' external tool search task} to 'Prepared'
[16:41:02.574] [Tasks] Promoting task {Bowtie aligner validate task} to 'Running'
[16:41:02.574] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.580] [Tasks] Promoting task {Bowtie aligner validate task} to 'Finished'
[16:41:02.581] [Tasks] Promoting task {Bowtie build indexer validate task} to 'Prepared'
[16:41:02.581] [Tasks] Promoting task {'Bowtie build indexer' external tool search task} to 'Prepared'
[16:41:02.581] [Tasks] Promoting task {Bowtie build indexer validate task} to 'Running'
[16:41:02.581] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.581] [Tasks] Promoting task {'Bowtie build indexer' external tool search task} to 'Running'
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[16:41:02.584] [Tasks] Promoting task {'Bowtie build indexer' external tool search task} to 'Finished'
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[16:41:02.584] [Tasks] Promoting task {Bowtie 2 aligner validate task} to 'Prepared'
[16:41:02.584] [Tasks] Promoting task {'Bowtie 2 aligner' external tool search task} to 'Prepared'
[16:41:02.584] [Tasks] Promoting task {Bowtie 2 aligner validate task} to 'Running'
[16:41:02.584] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.587] [Tasks] Promoting task {'Bowtie 2 aligner' external tool search task} to 'Finished'
[16:41:02.587] [Tasks] Promoting task {Bowtie 2 aligner validate task} to 'Finished'
[16:41:02.587] [Tasks] Promoting task {Bowtie 2 build indexer validate task} to 'Prepared'
[16:41:02.587] [Tasks] Promoting task {'Bowtie 2 build indexer' external tool search task} to 'Prepared'
[16:41:02.587] [Tasks] Promoting task {Bowtie 2 build indexer validate task} to 'Running'
[16:41:02.588] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.588] [Tasks] Promoting task {'Bowtie 2 build indexer' external tool search task} to 'Running'
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[16:41:02.590] [Tasks] Promoting task {'Bowtie 2 build indexer' external tool search task} to 'Finished'
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[16:41:02.591] [Tasks] Promoting task {Bowtie 2 index inspector validate task} to 'Prepared'
[16:41:02.591] [Tasks] Promoting task {'Bowtie 2 index inspector' external tool search task} to 'Prepared'
[16:41:02.591] [Tasks] Promoting task {Bowtie 2 index inspector validate task} to 'Running'
[16:41:02.591] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.591] [Tasks] Promoting task {'Bowtie 2 index inspector' external tool search task} to 'Running'
[16:41:02.593] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.593] [Tasks] Promoting task {'Bowtie 2 index inspector' external tool search task} to 'Finished'
[16:41:02.593] [Tasks] Promoting task {Bowtie 2 index inspector validate task} to 'Finished'
[16:41:02.594] [Tasks] Promoting task {BWA validate task} to 'Prepared'
[16:41:02.594] [Tasks] Promoting task {'BWA' external tool search task} to 'Prepared'
[16:41:02.594] [Tasks] Promoting task {BWA validate task} to 'Running'
[16:41:02.594] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.594] [Tasks] Promoting task {'BWA' external tool search task} to 'Running'
[16:41:02.596] [Core Services] AppResource Threads ::release 1, available 999
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[16:41:02.596] [Tasks] Promoting task {BWA validate task} to 'Finished'
[16:41:02.597] [Tasks] Promoting task {SPAdes validate task} to 'Prepared'
[16:41:02.597] [Tasks] Promoting task {'SPAdes' external tool search task} to 'Prepared'
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[16:41:02.600] [Tasks] Promoting task {SAMtools validate task} to 'Prepared'
[16:41:02.600] [Tasks] Promoting task {'SAMtools' external tool search task} to 'Prepared'
[16:41:02.600] [Tasks] Promoting task {SAMtools validate task} to 'Running'
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[16:41:02.600] [Tasks] Promoting task {'SAMtools' external tool search task} to 'Running'
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[16:41:02.602] [Tasks] Promoting task {'SAMtools' external tool search task} to 'Finished'
[16:41:02.602] [Tasks] Promoting task {SAMtools validate task} to 'Finished'
[16:41:02.602] [Tasks] Promoting task {BCFtools validate task} to 'Prepared'
[16:41:02.603] [Tasks] Promoting task {'BCFtools' external tool search task} to 'Prepared'
[16:41:02.603] [Tasks] Promoting task {BCFtools validate task} to 'Running'
[16:41:02.603] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.603] [Tasks] Promoting task {'BCFtools' external tool search task} to 'Running'
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[16:41:02.605] [Tasks] Promoting task {'BCFtools' external tool search task} to 'Finished'
[16:41:02.605] [Tasks] Promoting task {BCFtools validate task} to 'Finished'
[16:41:02.605] [Tasks] Promoting task {Tabix validate task} to 'Prepared'
[16:41:02.605] [Tasks] Promoting task {'Tabix' external tool search task} to 'Prepared'
[16:41:02.605] [Tasks] Promoting task {Tabix validate task} to 'Running'
[16:41:02.605] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.608] [Tasks] Promoting task {Tabix validate task} to 'Finished'
[16:41:02.608] [Tasks] Promoting task {Spidey validate task} to 'Prepared'
[16:41:02.608] [Tasks] Promoting task {'Spidey' external tool search task} to 'Prepared'
[16:41:02.608] [Tasks] Promoting task {Spidey validate task} to 'Running'
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[16:41:02.611] [Tasks] Promoting task {Spidey validate task} to 'Finished'
[16:41:02.611] [Tasks] Promoting task {bedtools validate task} to 'Prepared'
[16:41:02.611] [Tasks] Promoting task {'bedtools' external tool search task} to 'Prepared'
[16:41:02.611] [Tasks] Promoting task {bedtools validate task} to 'Running'
[16:41:02.611] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.611] [Tasks] Promoting task {'bedtools' external tool search task} to 'Running'
[16:41:02.614] [Core Services] AppResource Threads ::release 1, available 999
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[16:41:02.614] [Tasks] Promoting task {bedtools validate task} to 'Finished'
[16:41:02.614] [Tasks] Promoting task {cutadapt validate task} to 'Prepared'
[16:41:02.614] [Tasks] Promoting task {'cutadapt' external tool search task} to 'Prepared'
[16:41:02.614] [Tasks] Promoting task {cutadapt validate task} to 'Running'
[16:41:02.614] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
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[16:41:02.617] [Core Services] AppResource Threads ::release 1, available 999
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[16:41:02.617] [Tasks] Promoting task {cutadapt validate task} to 'Finished'
[16:41:02.617] [Tasks] Promoting task {bigwig validate task} to 'Prepared'
[16:41:02.617] [Tasks] Promoting task {'bigwig' external tool search task} to 'Prepared'
[16:41:02.617] [Tasks] Promoting task {bigwig validate task} to 'Running'
[16:41:02.617] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.617] [Tasks] Promoting task {'bigwig' external tool search task} to 'Running'
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[16:41:02.620] [Tasks] Promoting task {bigwig validate task} to 'Finished'
[16:41:02.620] [Tasks] Promoting task {TopHat validate task} to 'Prepared'
[16:41:02.620] [Tasks] Promoting task {'TopHat' external tool search task} to 'Prepared'
[16:41:02.620] [Tasks] Promoting task {TopHat validate task} to 'Running'
[16:41:02.620] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.620] [Tasks] Promoting task {'TopHat' external tool search task} to 'Running'
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[16:41:02.623] [Tasks] Promoting task {'TopHat' external tool search task} to 'Finished'
[16:41:02.623] [Tasks] Promoting task {TopHat validate task} to 'Finished'
[16:41:02.623] [Tasks] Promoting task {Cuffcompare validate task} to 'Prepared'
[16:41:02.623] [Tasks] Promoting task {'Cuffcompare' external tool search task} to 'Prepared'
[16:41:02.623] [Tasks] Promoting task {Cuffcompare validate task} to 'Running'
[16:41:02.623] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.623] [Tasks] Promoting task {'Cuffcompare' external tool search task} to 'Running'
[16:41:02.627] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.627] [Tasks] Promoting task {'Cuffcompare' external tool search task} to 'Finished'
[16:41:02.628] [Tasks] Promoting task {Cuffcompare validate task} to 'Finished'
[16:41:02.628] [Tasks] Promoting task {Cuffdiff validate task} to 'Prepared'
[16:41:02.628] [Tasks] Promoting task {'Cuffdiff' external tool search task} to 'Prepared'
[16:41:02.628] [Tasks] Promoting task {Cuffdiff validate task} to 'Running'
[16:41:02.628] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.628] [Tasks] Promoting task {'Cuffdiff' external tool search task} to 'Running'
[16:41:02.631] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.631] [Tasks] Promoting task {'Cuffdiff' external tool search task} to 'Finished'
[16:41:02.631] [Tasks] Promoting task {Cuffdiff validate task} to 'Finished'
[16:41:02.632] [Tasks] Promoting task {Cufflinks validate task} to 'Prepared'
[16:41:02.632] [Tasks] Promoting task {'Cufflinks' external tool search task} to 'Prepared'
[16:41:02.632] [Tasks] Promoting task {Cufflinks validate task} to 'Running'
[16:41:02.632] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.632] [Tasks] Promoting task {'Cufflinks' external tool search task} to 'Running'
[16:41:02.634] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.634] [Tasks] Promoting task {'Cufflinks' external tool search task} to 'Finished'
[16:41:02.634] [Tasks] Promoting task {Cufflinks validate task} to 'Finished'
[16:41:02.635] [Tasks] Promoting task {Cuffmerge validate task} to 'Prepared'
[16:41:02.635] [Tasks] Promoting task {'Cuffmerge' external tool search task} to 'Prepared'
[16:41:02.635] [Tasks] Promoting task {Cuffmerge validate task} to 'Running'
[16:41:02.635] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.635] [Tasks] Promoting task {'Cuffmerge' external tool search task} to 'Running'
[16:41:02.637] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.637] [Tasks] Promoting task {'Cuffmerge' external tool search task} to 'Finished'
[16:41:02.638] [Tasks] Promoting task {Cuffmerge validate task} to 'Finished'
[16:41:02.638] [Tasks] Promoting task {Gffread validate task} to 'Prepared'
[16:41:02.638] [Tasks] Promoting task {'Gffread' external tool search task} to 'Prepared'
[16:41:02.638] [Tasks] Promoting task {Gffread validate task} to 'Running'
[16:41:02.638] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.638] [Tasks] Promoting task {'Gffread' external tool search task} to 'Running'
[16:41:02.640] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.640] [Tasks] Promoting task {'Gffread' external tool search task} to 'Finished'
[16:41:02.641] [Tasks] Promoting task {Gffread validate task} to 'Finished'
[16:41:02.641] [Tasks] Promoting task {MACS validate task} to 'Prepared'
[16:41:02.641] [Tasks] Promoting task {'MACS' external tool search task} to 'Prepared'
[16:41:02.641] [Tasks] Promoting task {MACS validate task} to 'Running'
[16:41:02.641] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.641] [Tasks] Promoting task {'MACS' external tool search task} to 'Running'
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[16:41:02.643] [Tasks] Promoting task {'MACS' external tool search task} to 'Finished'
[16:41:02.644] [Tasks] Promoting task {MACS validate task} to 'Finished'
[16:41:02.644] [Tasks] Promoting task {peak2gene validate task} to 'Prepared'
[16:41:02.644] [Tasks] Promoting task {'peak2gene' external tool search task} to 'Prepared'
[16:41:02.644] [Tasks] Promoting task {peak2gene validate task} to 'Running'
[16:41:02.644] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.644] [Tasks] Promoting task {'peak2gene' external tool search task} to 'Running'
[16:41:02.646] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.646] [Tasks] Promoting task {'peak2gene' external tool search task} to 'Finished'
[16:41:02.647] [Tasks] Promoting task {peak2gene validate task} to 'Finished'
[16:41:02.647] [Tasks] Promoting task {vcfutils validate task} to 'Prepared'
[16:41:02.647] [Tasks] Promoting task {'vcfutils' external tool search task} to 'Prepared'
[16:41:02.647] [Tasks] Promoting task {vcfutils validate task} to 'Running'
[16:41:02.647] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.647] [Tasks] Promoting task {'vcfutils' external tool search task} to 'Running'
[16:41:02.649] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.649] [Tasks] Promoting task {'vcfutils' external tool search task} to 'Finished'
[16:41:02.650] [Tasks] Promoting task {vcfutils validate task} to 'Finished'
[16:41:02.650] [Tasks] Promoting task {SnpEff validate task} to 'Prepared'
[16:41:02.650] [Tasks] Promoting task {'SnpEff' external tool search task} to 'Prepared'
[16:41:02.650] [Tasks] Promoting task {SnpEff validate task} to 'Running'
[16:41:02.650] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.650] [Tasks] Promoting task {'SnpEff' external tool search task} to 'Running'
[16:41:02.652] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.652] [Tasks] Promoting task {'SnpEff' external tool search task} to 'Finished'
[16:41:02.653] [Tasks] Promoting task {SnpEff validate task} to 'Finished'
[16:41:02.653] [Tasks] Promoting task {FastQC validate task} to 'Prepared'
[16:41:02.653] [Tasks] Promoting task {'FastQC' external tool search task} to 'Prepared'
[16:41:02.653] [Tasks] Promoting task {FastQC validate task} to 'Running'
[16:41:02.653] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.653] [Tasks] Promoting task {'FastQC' external tool search task} to 'Running'
[16:41:02.655] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.655] [Tasks] Promoting task {'FastQC' external tool search task} to 'Finished'
[16:41:02.656] [Tasks] Promoting task {FastQC validate task} to 'Finished'
[16:41:02.656] [Tasks] Promoting task {HMMER build validate task} to 'Prepared'
[16:41:02.656] [Tasks] Promoting task {'HMMER build' external tool search task} to 'Prepared'
[16:41:02.656] [Tasks] Promoting task {HMMER build validate task} to 'Running'
[16:41:02.656] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.656] [Tasks] Promoting task {'HMMER build' external tool search task} to 'Running'
[16:41:02.658] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.658] [Tasks] Promoting task {'HMMER build' external tool search task} to 'Finished'
[16:41:02.658] [Tasks] Promoting task {HMMER build validate task} to 'Finished'
[16:41:02.659] [Tasks] Promoting task {HMMER search validate task} to 'Prepared'
[16:41:02.659] [Tasks] Promoting task {'HMMER search' external tool search task} to 'Prepared'
[16:41:02.659] [Tasks] Promoting task {HMMER search validate task} to 'Running'
[16:41:02.659] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.659] [Tasks] Promoting task {'HMMER search' external tool search task} to 'Running'
[16:41:02.661] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.661] [Tasks] Promoting task {'HMMER search' external tool search task} to 'Finished'
[16:41:02.661] [Tasks] Promoting task {HMMER search validate task} to 'Finished'
[16:41:02.661] [Tasks] Promoting task {PHMMER search validate task} to 'Prepared'
[16:41:02.661] [Tasks] Promoting task {'PHMMER search' external tool search task} to 'Prepared'
[16:41:02.662] [Tasks] Promoting task {PHMMER search validate task} to 'Running'
[16:41:02.662] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.662] [Tasks] Promoting task {'PHMMER search' external tool search task} to 'Running'
[16:41:02.664] [Core Services] AppResource Threads ::release 1, available 999
[16:41:02.664] [Tasks] Promoting task {'PHMMER search' external tool search task} to 'Finished'
[16:41:02.668] [Tasks] Promoting task {PHMMER search validate task} to 'Finished'
[16:41:02.704] [Tasks] Promoting task {Checking external tools} to 'Finished'
[16:41:02.705] [Tasks] Unregistering task: Checking external tools
[16:41:02.706] [Tasks] Deleting task: django validate task
[16:41:02.706] [Tasks] Deleting task: 'Rscript' external tool search task
[16:41:02.706] [Tasks] Deleting task: Rscript validate task
[16:41:02.706] [Tasks] Deleting task: 'ClustalW' external tool search task
[16:41:02.706] [Tasks] Deleting task: ClustalW validate task
[16:41:02.706] [Tasks] Deleting task: 'ClustalO' external tool search task
[16:41:02.706] [Tasks] Deleting task: ClustalO validate task
[16:41:02.706] [Tasks] Deleting task: 'MAFFT' external tool search task
[16:41:02.706] [Tasks] Deleting task: MAFFT validate task
[16:41:02.706] [Tasks] Deleting task: 'T-Coffee' external tool search task
[16:41:02.706] [Tasks] Deleting task: T-Coffee validate task
[16:41:02.706] [Tasks] Deleting task: 'MrBayes' external tool search task
[16:41:02.706] [Tasks] Deleting task: MrBayes validate task
[16:41:02.706] [Tasks] Deleting task: 'PhyML Maximum Likelihood' external tool search task
[16:41:02.706] [Tasks] Deleting task: PhyML Maximum Likelihood validate task
[16:41:02.706] [Tasks] Deleting task: 'FormatDB' external tool search task
[16:41:02.706] [Tasks] Deleting task: FormatDB validate task
[16:41:02.706] [Tasks] Deleting task: 'MakeBLASTDB' external tool search task
[16:41:02.706] [Tasks] Deleting task: MakeBLASTDB validate task
[16:41:02.706] [Tasks] Deleting task: 'BlastAll' external tool search task
[16:41:02.706] [Tasks] Deleting task: BlastAll validate task
[16:41:02.706] [Tasks] Deleting task: 'BlastN' external tool search task
[16:41:02.706] [Tasks] Deleting task: BlastN validate task
[16:41:02.706] [Tasks] Deleting task: 'BlastP' external tool search task
[16:41:02.706] [Tasks] Deleting task: BlastP validate task
[16:41:02.706] [Tasks] Deleting task: 'BlastX' external tool search task
[16:41:02.706] [Tasks] Deleting task: BlastX validate task
[16:41:02.707] [Tasks] Deleting task: 'TBlastN' external tool search task
[16:41:02.707] [Tasks] Deleting task: TBlastN validate task
[16:41:02.707] [Tasks] Deleting task: 'TBlastX' external tool search task
[16:41:02.707] [Tasks] Deleting task: TBlastX validate task
[16:41:02.707] [Tasks] Deleting task: 'RPSBlast' external tool search task
[16:41:02.707] [Tasks] Deleting task: RPSBlast validate task
[16:41:02.707] [Tasks] Deleting task: 'BlastDBCmd' external tool search task
[16:41:02.707] [Tasks] Deleting task: BlastDBCmd validate task
[16:41:02.707] [Tasks] Deleting task: 'CAP3' external tool search task
[16:41:02.707] [Tasks] Deleting task: CAP3 validate task
[16:41:02.707] [Tasks] Deleting task: 'Bowtie aligner' external tool search task
[16:41:02.707] [Tasks] Deleting task: Bowtie aligner validate task
[16:41:02.707] [Tasks] Deleting task: 'Bowtie build indexer' external tool search task
[16:41:02.707] [Tasks] Deleting task: Bowtie build indexer validate task
[16:41:02.707] [Tasks] Deleting task: 'Bowtie 2 aligner' external tool search task
[16:41:02.707] [Tasks] Deleting task: Bowtie 2 aligner validate task
[16:41:02.707] [Tasks] Deleting task: 'Bowtie 2 build indexer' external tool search task
[16:41:02.707] [Tasks] Deleting task: Bowtie 2 build indexer validate task
[16:41:02.707] [Tasks] Deleting task: 'Bowtie 2 index inspector' external tool search task
[16:41:02.707] [Tasks] Deleting task: Bowtie 2 index inspector validate task
[16:41:02.707] [Tasks] Deleting task: 'BWA' external tool search task
[16:41:02.707] [Tasks] Deleting task: BWA validate task
[16:41:02.707] [Tasks] Deleting task: 'SPAdes' external tool search task
[16:41:02.707] [Tasks] Deleting task: SPAdes validate task
[16:41:02.707] [Tasks] Deleting task: 'SAMtools' external tool search task
[16:41:02.707] [Tasks] Deleting task: SAMtools validate task
[16:41:02.707] [Tasks] Deleting task: 'BCFtools' external tool search task
[16:41:02.707] [Tasks] Deleting task: BCFtools validate task
[16:41:02.707] [Tasks] Deleting task: 'Tabix' external tool search task
[16:41:02.707] [Tasks] Deleting task: Tabix validate task
[16:41:02.707] [Tasks] Deleting task: 'Spidey' external tool search task
[16:41:02.707] [Tasks] Deleting task: Spidey validate task
[16:41:02.707] [Tasks] Deleting task: 'bedtools' external tool search task
[16:41:02.707] [Tasks] Deleting task: bedtools validate task
[16:41:02.707] [Tasks] Deleting task: 'cutadapt' external tool search task
[16:41:02.707] [Tasks] Deleting task: cutadapt validate task
[16:41:02.707] [Tasks] Deleting task: 'bigwig' external tool search task
[16:41:02.707] [Tasks] Deleting task: bigwig validate task
[16:41:02.707] [Tasks] Deleting task: 'TopHat' external tool search task
[16:41:02.707] [Tasks] Deleting task: TopHat validate task
[16:41:02.707] [Tasks] Deleting task: 'Cuffcompare' external tool search task
[16:41:02.707] [Tasks] Deleting task: Cuffcompare validate task
[16:41:02.707] [Tasks] Deleting task: 'Cuffdiff' external tool search task
[16:41:02.707] [Tasks] Deleting task: Cuffdiff validate task
[16:41:02.707] [Tasks] Deleting task: 'Cufflinks' external tool search task
[16:41:02.707] [Tasks] Deleting task: Cufflinks validate task
[16:41:02.707] [Tasks] Deleting task: 'Cuffmerge' external tool search task
[16:41:02.707] [Tasks] Deleting task: Cuffmerge validate task
[16:41:02.707] [Tasks] Deleting task: 'Gffread' external tool search task
[16:41:02.707] [Tasks] Deleting task: Gffread validate task
[16:41:02.707] [Tasks] Deleting task: 'MACS' external tool search task
[16:41:02.707] [Tasks] Deleting task: MACS validate task
[16:41:02.707] [Tasks] Deleting task: 'peak2gene' external tool search task
[16:41:02.708] [Tasks] Deleting task: peak2gene validate task
[16:41:02.708] [Tasks] Deleting task: 'vcfutils' external tool search task
[16:41:02.708] [Tasks] Deleting task: vcfutils validate task
[16:41:02.708] [Tasks] Deleting task: 'SnpEff' external tool search task
[16:41:02.708] [Tasks] Deleting task: SnpEff validate task
[16:41:02.708] [Tasks] Deleting task: 'FastQC' external tool search task
[16:41:02.708] [Tasks] Deleting task: FastQC validate task
[16:41:02.708] [Tasks] Deleting task: 'HMMER build' external tool search task
[16:41:02.708] [Tasks] Deleting task: HMMER build validate task
[16:41:02.708] [Tasks] Deleting task: 'HMMER search' external tool search task
[16:41:02.708] [Tasks] Deleting task: HMMER search validate task
[16:41:02.708] [Tasks] Deleting task: 'PHMMER search' external tool search task
[16:41:02.708] [Tasks] Deleting task: PHMMER search validate task
[16:41:02.708] [Tasks] Deleting task: Checking external tools
[16:41:02.760] [Tasks] Registering new task: Check for updates
[16:41:02.761] [Tasks] Registering new task: Checking access rights to the temporary folder
[16:41:02.762] [Tasks] Registering new task: Shtirlitz Startup Task
[16:41:02.973] [User Interface] Event Type: QEvent::Type(PolishRequest)
[16:41:02.973] [User Interface] Event Type: QEvent::Type(Polish)
[16:41:02.974] [User Interface] Event Type: QEvent::Type(ChildPolished)
[16:41:02.974] [User Interface] Event Type: QEvent::Type(LayoutRequest)
[16:41:02.976] [Tasks] Promoting task {Check for updates} to 'Prepared'
[16:41:02.976] [Tasks] Starting {Check for updates} task
[16:41:02.976] [Tasks] Promoting task {Checking access rights to the temporary folder} to 'Prepared'
[16:41:02.976] [Tasks] Promoting task {Shtirlitz Startup Task} to 'Prepared'
[16:41:02.976] [Core Services] AppResource Threads ::tryAcquire 1, available 1000
[16:41:02.976] [Tasks] Promoting task {Check for updates} to 'Running'
[16:41:02.976] [Core Services] AppResource Threads ::tryAcquire 1, available 999
[16:41:02.976] [Tasks] Promoting task {Checking access rights to the temporary folder} to 'Running'
[16:41:02.976] [Tasks] Promoting task {Shtirlitz Startup Task} to 'Running'
[16:41:03.021] [Tasks] Promoting task {Shtirlitz Startup Task} to 'Finished'
[16:41:03.028] [Core Services] AppResource Threads ::release 1, available 998
[16:41:03.028] [Tasks] Promoting task {Checking access rights to the temporary folder} to 'Finished'
[16:41:03.029] [Tasks] Unregistering task: Checking access rights to the temporary folder
[16:41:03.030] [Tasks] Deleting task: Checking access rights to the temporary folder
[16:41:03.030] [Tasks] Unregistering task: Shtirlitz Startup Task
[16:41:03.030] [Tasks] Deleting task: Shtirlitz Startup Task
[16:41:03.874] [User Interface] Event Type: QEvent::Type(DynamicPropertyChange)
[16:41:03.875] [User Interface] Event Type: QEvent::Type(StyleChange)
[16:41:03.875] [User Interface] Event Type: QEvent::Type(ParentChange)
[16:41:03.912] [User Interface] Event Type: QEvent::Type(StyleChange)
[16:41:03.912] [User Interface] Event Type: QEvent::Type(ParentChange)
[16:41:03.920] [User Interface] Event Type: QEvent::Type(WindowIconChange)
[16:41:03.920] [User Interface] Adding window: 'Start Page'
[16:41:03.921] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:03.921] [User Interface] Event Type: QEvent::Type(Move)
[16:41:03.921] [User Interface] Event Type: QEvent::Type(Resize)
[16:41:04.068] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.069] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.069] [User Interface] Event Type: QEvent::Type(Hide)
[16:41:04.070] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.070] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.070] [User Interface] Event Type: QEvent::Type(Move)
[16:41:04.070] [User Interface] Event Type: QEvent::Type(Resize)
[16:41:04.073] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.073] [User Interface] Event Type: QEvent::Type(Show)
[16:41:04.076] [User Interface] Event Type: QEvent::Type(Enter)
[16:41:04.077] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.077] [User Interface] Switching active MDI window from '<no window>' to 'Start Page'
[16:41:04.078] [User Interface] Event Type: QEvent::Type(Show)
[16:41:04.079] [User Interface] Event Type: QEvent::Type(ShowToParent)
[16:41:04.079] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.080] [User Interface] Event Type: QEvent::Type(Leave)
[16:41:04.080] [User Interface] Event Type: QEvent::Type(Hide)
[16:41:04.081] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.083] [User Interface] Event Type: QEvent::Type(Show)
[16:41:04.085] [User Interface] Event Type: QEvent::Type(Enter)
[16:41:04.085] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:04.123] [User Interface] Event Type: QEvent::Type(LayoutRequest)
[16:41:04.123] [User Interface] Event Type: QEvent::Type(UpdateLater)
[16:41:04.124] [User Interface] Event Type: QEvent::Type(UpdateLater)
[16:41:04.124] [User Interface] Event Type: QEvent::Type(UpdateLater)
[16:41:04.812] [User Interface] Event Type: QEvent::Type(ToolTip)
[16:41:13.484] [Core Services] AppResource Threads ::release 1, available 999
[16:41:13.484] [Tasks] Promoting task {Check for updates} to 'Finished'
[16:41:13.484] [Tasks] Task {Check for updates} finished
[16:41:13.493] [Tasks] Unregistering task: Check for updates
[16:41:13.493] [Tasks] Deleting task: Check for updates
[16:41:22.619] [User Interface] Event Type: QEvent::Type(ToolTip)
[16:41:31.074] [User Interface] Event Type: QEvent::Type(Leave)
[16:41:31.682] [User Actions] WINDOW SIZE: 1282x718
[16:41:31.684] [User Actions] mouse_press Left_button 26 23 CLASS_NAME: QMenuBar TEXT: &File
[16:41:31.820] [User Actions] mouse_release
[16:41:32.803] [User Actions] mouse_press Left_button 69 351 CLASS_NAME: QMenu TEXT: &Exit
[16:41:32.971] [User Actions] mouse_release
[16:41:32.972] [Tasks] Registering new task: Shutdown
[16:41:32.996] [User Interface] Event Type: QEvent::Type(Enter)
[16:41:33.012] [Core Services] Starting shutdown process...
[16:41:33.015] [Tasks] Promoting task {Shutdown} to 'Prepared'
[16:41:33.015] [Tasks] Promoting task {Close windows} to 'Prepared'
[16:41:33.015] [Tasks] Promoting task {Shutdown} to 'Running'
[16:41:33.015] [Tasks] Promoting task {Close windows} to 'Running'
[16:41:33.056] [Tasks] Promoting task {Close windows} to 'Finished'
[16:41:33.056] [Core Services] AppResource PluginViewer ::tryAcquire 1, available 1
[16:41:33.056] [Tasks] Promoting task {Disable 'PluginViewer' service} to 'Prepared'
[16:41:33.056] [Tasks] Promoting task {Disable PluginViewer} to 'Prepared'
[16:41:33.056] [Tasks] Promoting task {Disable 'PluginViewer' service} to 'Running'
[16:41:33.056] [Tasks] Promoting task {Disable PluginViewer} to 'Running'
[16:41:33.063] [Tasks] Promoting task {Disable PluginViewer} to 'Finished'
[16:41:33.102] [Tasks] Promoting task {Disable 'PluginViewer' service} to 'Finished'
[16:41:33.103] [Core Services] AppResource PluginViewer ::release 1, available 0
[16:41:33.103] [Core Services] AppResource Query Designer ::tryAcquire 1, available 1
[16:41:33.103] [Tasks] Promoting task {Disable 'Query Designer' service} to 'Prepared'
[16:41:33.103] [Tasks] Promoting task {Close Designer} to 'Prepared'
[16:41:33.103] [Tasks] Promoting task {Disable 'Query Designer' service} to 'Running'
[16:41:33.103] [Tasks] Promoting task {Close Designer} to 'Running'
[16:41:33.108] [Tasks] Promoting task {Close Designer} to 'Finished'
[16:41:33.109] [Tasks] Promoting task {Disable 'Query Designer' service} to 'Finished'
[16:41:33.109] [Core Services] AppResource Query Designer ::release 1, available 0
[16:41:33.110] [Core Services] AppResource Workflow Designer ::tryAcquire 1, available 1
[16:41:33.110] [Tasks] Promoting task {Disable 'Workflow Designer' service} to 'Prepared'
[16:41:33.110] [Tasks] Promoting task {Close Designer} to 'Prepared'
[16:41:33.110] [Tasks] Promoting task {Disable 'Workflow Designer' service} to 'Running'
[16:41:33.110] [Tasks] Promoting task {Close Designer} to 'Running'
[16:41:33.115] [Tasks] Promoting task {Close Designer} to 'Finished'
[16:41:33.118] [Tasks] Promoting task {Disable 'Workflow Designer' service} to 'Finished'
[16:41:33.123] [Core Services] AppResource Workflow Designer ::release 1, available 0
[16:41:33.124] [Core Services] AppResource Test runner ::tryAcquire 1, available 1
[16:41:33.124] [Tasks] Promoting task {Disable 'Test runner' service} to 'Prepared'
[16:41:33.124] [Tasks] Promoting task {Disable 'Test runner' service} to 'Running'
[16:41:33.136] [Tasks] Promoting task {Disable 'Test runner' service} to 'Finished'
[16:41:33.169] [Core Services] AppResource Test runner ::release 1, available 0
[16:41:33.174] [User Interface] Event Type: QEvent::Type(WindowDeactivate)
[16:41:33.175] [User Interface] Event Type: QEvent::Type(Hide)
[16:41:33.175] [User Interface] Event Type: QEvent::Type(WindowStateChange)
[16:41:33.175] [User Interface] Window deactivation, no MDI context switch, window: 'Start Page'
[16:41:33.176] [Tasks] Promoting task {Shutdown} to 'Finished'
[16:41:33.210] [Tasks] Unregistering task: Shutdown
[16:41:33.210] [Tasks] Deleting task: Close windows
[16:41:33.210] [Tasks] Deleting task: Disable PluginViewer
[16:41:33.210] [Tasks] Deleting task: Disable 'PluginViewer' service
[16:41:33.210] [Tasks] Deleting task: Close Designer
[16:41:33.210] [Tasks] Deleting task: Disable 'Query Designer' service
[16:41:33.210] [Tasks] Deleting task: Close Designer
[16:41:33.210] [Tasks] Deleting task: Disable 'Workflow Designer' service
[16:41:33.210] [Tasks] Deleting task: Disable 'Test runner' service
[16:41:33.210] [Tasks] Deleting task: Shutdown
Task tree:
None
Stack trace:
/usr/lib/ugene/libU2Private.so.1(_ZN2U229CrashHandlerPrivateUnixNotMac15storeStackTraceEv+0x1b5)[0x7f7fef4b9a55]
/usr/lib/ugene/libU2Private.so.1(_ZN2U212CrashHandler15handleExceptionERK7QStringS3_+0x45)[0x7f7fef4b79d5]
/usr/lib/ugene/libU2Private.so.1(_ZN2U229CrashHandlerPrivateUnixNotMac16breakpadCallbackERKN15google_breakpad18MinidumpDescriptorEPvb+0x93)[0x7f7fef4b9583]
/usr/lib/ugene/libbreakpad.so.1(_ZN15google_breakpad16ExceptionHandler12GenerateDumpEPNS0_12CrashContextE+0x428)[0x7f7fe5492cb8]
/usr/lib/ugene/libbreakpad.so.1(+0x9f05)[0x7f7fe5492f05]
/usr/lib/ugene/libbreakpad.so.1(_ZN15google_breakpad16ExceptionHandler13SignalHandlerEiP9siginfo_tPv+0xa8)[0x7f7fe5493068]
/usr/lib/libc.so.6(+0x33a90)[0x7f7fe70a9a90]
/usr/lib/libQt5Widgets.so.5(_ZN7QWidgetD2Ev+0x1af)[0x7f7feeb5d47f]
/usr/lib/libQt5Widgets.so.5(_ZN7QWidgetD0Ev+0x9)[0x7f7feeb5d929]
/usr/lib/libQt5Core.so.5(_ZN14QObjectPrivate14deleteChildrenEv+0x71)[0x7f7fe7c6b411]
/usr/lib/libQt5Widgets.so.5(_ZN7QWidgetD2Ev+0x36b)[0x7f7feeb5d63b]
/usr/lib/ugene/ugeneui[0x482631]
/usr/lib/libQt5Core.so.5(_ZN7QObject5eventEP6QEvent+0x120)[0x7f7fe7c6dbe0]
/usr/lib/libQt5Widgets.so.5(_ZN7QWidget5eventEP6QEvent+0x54b)[0x7f7feeb61ecb]
/usr/lib/libQt5Widgets.so.5(_ZN11QMainWindow5eventEP6QEvent+0x16b)[0x7f7feec60d0b]
/usr/lib/libQt5Widgets.so.5(_ZN19QApplicationPrivate13notify_helperEP7QObjectP6QEvent+0x9c)[0x7f7feeb1a34c]
/usr/lib/libQt5Widgets.so.5(_ZN12QApplication6notifyEP7QObjectP6QEvent+0x261)[0x7f7feeb21b61]
/usr/lib/libQt5Core.so.5(_ZN16QCoreApplication15notifyInternal2EP7QObjectP6QEvent+0x110)[0x7f7fe7c41440]
/usr/lib/libQt5Core.so.5(_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData+0x2dd)[0x7f7fe7c43bcd]
/usr/lib/libQt5Quick.so.5(+0x278584)[0x7f7fe50c5584]
/usr/lib/libQt5Quick.so.5(_ZN19QQuickRenderControlD1Ev+0x40)[0x7f7fe50c5800]
/usr/lib/libQt5QuickWidgets.so.5(+0xd383)[0x7f7fe4c48383]
/usr/lib/libQt5QuickWidgets.so.5(+0xbfd3)[0x7f7fe4c46fd3]
/usr/lib/libQt5QuickWidgets.so.5(+0xc059)[0x7f7fe4c47059]
/usr/lib/libQt5Core.so.5(_ZN7QObjectD2Ev+0x677)[0x7f7fe7c74db7]
/usr/lib/libQt5Widgets.so.5(_ZN7QWidgetD2Ev+0x3e3)[0x7f7feeb5d6b3]
/usr/lib/libQt5WebEngineWidgets.so.5(+0x30cba)[0x7f7fef251cba]
/usr/lib/libQt5WebEngineCore.so.5(+0x6a482b)[0x7f7fe965882b]
/usr/lib/libQt5WebEngineCore.so.5(+0x6a49b9)[0x7f7fe96589b9]
/usr/lib/libQt5WebEngineCore.so.5(+0xe8e57f)[0x7f7fe9e4257f]
/usr/lib/libQt5WebEngineCore.so.5(+0xe814a3)[0x7f7fe9e354a3]
/usr/lib/libQt5WebEngineCore.so.5(+0x102426e)[0x7f7fe9fd826e]
/usr/lib/libQt5WebEngineCore.so.5(+0xdfdaed)[0x7f7fe9db1aed]
/usr/lib/libQt5WebEngineCore.so.5(+0xdfdf89)[0x7f7fe9db1f89]
/usr/lib/libQt5WebEngineCore.so.5(+0xe0417d)[0x7f7fe9db817d]
/usr/lib/libQt5WebEngineCore.so.5(+0x102693b)[0x7f7fe9fda93b]
/usr/lib/libQt5WebEngineCore.so.5(+0x102216a)[0x7f7fe9fd616a]
/usr/lib/libQt5WebEngineCore.so.5(+0xf23104)[0x7f7fe9ed7104]
/usr/lib/libQt5WebEngineCore.so.5(+0xf23489)[0x7f7fe9ed7489]
/usr/lib/libQt5WebEngineCore.so.5(+0x6c141e)[0x7f7fe967541e]
/usr/lib/libQt5WebEngineCore.so.5(_ZN15QtWebEngineCore18WebContentsAdapterD1Ev+0x1a)[0x7f7fe967567a]
/usr/lib/libQt5WebEngineWidgets.so.5(+0x22cc6)[0x7f7fef243cc6]
/usr/lib/libQt5WebEngineWidgets.so.5(+0x22cd9)[0x7f7fef243cd9]
/usr/lib/libQt5WebEngineWidgets.so.5(_ZN14QWebEnginePageD1Ev+0x30)[0x7f7fef23e3f0]
/usr/lib/ugene/ugeneui[0x505457]
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