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bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

chslabmirnapipeline

Teach using, miRNA-seq analysis pipeline

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cmapr

R

complexheatmap

Make Complex Heatmaps

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

dataanalyticswithrbook

介紹如何使用R完成資料讀取、處理、分析與呈現，以及大數據技術與R的整合

deseq2

Differential gene expression analysis based on the negative binomial distribution

dge_workshop

espresso

eSPRESSO

fgsea

Fast Gene Set Enrichment Analysis

gatk

Official code repository for GATK versions 4 and up

gdrive

Google Drive CLI Client

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

illumina450k_filtering

A collection of resources to filter 'bad' probes from the Illumina 450k methylation array

interactive-3d-plotting-in-seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

kc-lan

kc-lan.github.io

lemon-tree

Module Network Inference software

loomr

An R-based interface for loom files

methylation-analysis

methylationanalysisworkflow

A cross-package Bioconductor workflow for analysing methylation array data

methylumi

minfi

Devel repository for minfi

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

mmp_screening

using streamlit to aid the screening process of the MMP of TYRA

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mysqltutorial

MySQL超新手入門

nctu_formosa

it is a software code about NCTU_Formosa

parallel-fastq-dump

parallel fastq-dump wrapper