alienzj Goto Github PK

.tmux

🇫🇷 Oh my tmux! My self-contained, pretty & versatile tmux configuration made with ❤️

16s-dada2

Snakemake pipeline for amplicon sequencing using dada2

2019-ncov-japan

🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan

2brad-m

2evolutionmodes

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

alienzj.github.io

ZJ Org Blog

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

alphafold

Open source code for AlphaFold.

amdirt

AncientMetagenomeDir Toolkit

ameta

Ancient microbiome snakemake workflow

ancientmetagenomedir

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

antismash

antiSMASH

anvio

An analysis and visualization platform for 'omics data

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

archaea

args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

asap

A scalable bacterial genome assembly, annotation and analysis pipeline

atlas

ATLAS - Three commands to start analysing your metagenome data

autocd

Automated synthetic microbial Community Design

autossh-tunnel-windows

A quick repo documenting my configuration for setting up AutoSSH on Windows for tunnelling.

aviary

A snakemake pipeline for binning metagenomic assemblies

awesome-vdj

Tools and databases for analyzing HLA and VDJ genes.

bacassembly

hybrid assembly and polish using short and long reads

bactopia

A flexible pipeline for complete analysis of bacterial genomes

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

bandageng

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

benchmark_microbiome_transformations

Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"