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Jie Zhu's Projects

traitar3 icon traitar3

From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)

trust4 icon trust4

TCR and BCR assembly from RNA-seq data

tximeta icon tximeta

Transcript Quantification Import with Automatic Metadata

unicycler icon unicycler

hybrid assembly pipeline for bacterial genomes

unipressed icon unipressed

Comprehensive Python client for the Uniprot REST API

vamb icon vamb

Variational autoencoder for metagenomic binning

varlociraptor icon varlociraptor

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

vircov icon vircov

Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood:

virsorter2 icon virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

wfi icon wfi

whofluIRMA - influenza assembly pipeline

winapps icon winapps

Run Windows apps such as Microsoft Office/Adobe in Linux (Ubuntu/Fedora) and GNOME/KDE as if they were a part of the native OS, including Nautilus integration.

wol icon wol

Reference Phylogeny for Bacterial and Archaeal Genomes

woltka icon woltka

versatile metagenome classifier

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