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flye

De novo assembler for single molecule sequencing reads using repeat graphs

fontconfig-zh-cn

fractal

FRACTAL: framework for distributed computing to trace large accurate lineages

fungi-nature-2022

Raw data, Python and R scripts from ITS analysis of Aykut et al. public sequencing data

galah

More scalable dereplication for metagenome assembled genomes

galaxy

Data intensive science for everyone.

gan

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

genomad

geNomad: Identification of mobile genetic elements

genomepy

Download genomes the easy way.

geph4

Geph (迷霧通) is a modular Internet censorship circumvention system designed specifically to deal with national filtering.

gephgui

gnnome-assembly

Learning to untangle genome assembly with graph neural networks.

grayskull

Grayskull :skull: - Recipe generator for Conda

gretel

An algorithm for recovering haplotypes from metagenomes

grid

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

gt-pro

gtdb-taxdump

GTDB taxonomy taxdump files with trackable TaxIds

gtdb2ncbi

GTDB => NCBI

gtdb_to_taxdump

Convert GTDB taxonomy to NCBI taxdump format

gtdbtk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

gtotree

A user-friendly workflow for phylogenomics

hansel

A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence

hgtector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

hifiasm-meta

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

home-manager

Manage a user environment using Nix [maintainer=@rycee]

humann

HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

humansystemoptimization

健康学习到150岁 - 人体系统调优不完全指南

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

insilicoseq

:rocket: A sequencing simulator