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Name: Jie Zhu
Type: User
Bio: I commit for microbiome informatics.
Twitter: alienzj
Name: Jie Zhu
Type: User
Bio: I commit for microbiome informatics.
Twitter: alienzj
🇫🇷 Oh my tmux! My self-contained, pretty & versatile tmux configuration made with ❤️
Snakemake pipeline for amplicon sequencing using dada2
🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
ZJ Org Blog
basic walk-throughs for alignment and variant calling from NGS sequencing data
Open source code for AlphaFold.
AncientMetagenomeDir Toolkit
Ancient microbiome snakemake workflow
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
antiSMASH
An analysis and visualization platform for 'omics data
Applied Computational Genomics Course at UU: Spring 2020
Fast and accurate in silico inference of HLA genotypes from RNA-seq
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
A scalable bacterial genome assembly, annotation and analysis pipeline
ATLAS - Three commands to start analysing your metagenome data
Automated synthetic microbial Community Design
A quick repo documenting my configuration for setting up AutoSSH on Windows for tunnelling.
A snakemake pipeline for binning metagenomic assemblies
Tools and databases for analyzing HLA and VDJ genes.
hybrid assembly and polish using short and long reads
A flexible pipeline for complete analysis of bacterial genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.