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protologger

Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

pyhmmer

Cython bindings and Python interface to HMMER3.

pytorch-template

PyTorch deep learning projects made easy.

q2-dada2

QIIME 2 plugin wrapping DADA2

q2-deblur

q2-diversity

q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification

q2-quality-control

A QIIME 2 plugin for quality control of sequence and feature data

q2-quality-filter

Quality filtering for QIIME2

qiime2

Official repository for the QIIME 2 framework.

rathole

A lightweight and high-performance reverse proxy for NAT traversal, written in Rust. An alternative to frp and ngrok.

rhea-network-pipeline

ribodetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

rima_pipeline

rmeta

collect the R function for daily work

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rnavar

gatk4 RNA variant calling pipeline

rosalind

Rosalind solver

rosella

Metagenomic Binning Algorithm

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-bio-tools

A set of command line utilities based on Rust-Bio.

rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

samestr

SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.

sample-sheet

A permissively licensed library designed to replace Illumina's Experiment Manager

semibin

seqtk

Toolkit for processing sequences in FASTA/Q formats

serratus

Ultra-deep search for novel viruses

showyourwork

Fully reproducible, open source scientific articles in LaTeX.

simplefox

🦊 A Userstyle theme for Firefox minimalist and Keyboard centered.