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easyamplicon

Easy Amplicon data analysis pipeline

elmaven

LC-MS data processing tool for large-scale metabolomics experiments.

endor

R-package to simplify tree ensemble models to decision ensemble, calculate feature and interaction importance, and construct variable networks.

eukcc

Tool to estimate genome quality of microbial eukaryotes

eukdetect

factoextra

Extract and Visualize the Results of Multivariate Data Analyses

fastbio

Deep learning library for biological sequences. Extension of Fastai and Pytorch.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastq-dl

Download FASTQ files from SRA or ENA repositories.

fastqc-rs

A quality control tool for FASTQ files written in rust

fastqt

FastQC port to Qt5: A quality control tool for high throughput sequence data.

feast

Fast expectation maximization for microbial source tracking

figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

find-scg

Single copy gene finder

flu-sequence-predictor

An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.

flye

De novo assembler for single molecule sequencing reads using repeat graphs

fontconfig-zh-cn

fractal

FRACTAL: framework for distributed computing to trace large accurate lineages

galah

More scalable dereplication for metagenome assembled genomes

galaxy

Data intensive science for everyone.

gan

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

genomad

geNomad: Identification of mobile genetic elements

genomepy

Download genomes the easy way.

geph4

Geph (迷霧通) is a modular Internet censorship circumvention system designed specifically to deal with national filtering.

gephgui

gnnome-assembly

Learning to untangle genome assembly with graph neural networks.

grayskull

Grayskull :skull: - Recipe generator for Conda

gt-pro

gtdb-taxdump

GTDB taxonomy taxdump files with trackable TaxIds

gtdb2ncbi

GTDB => NCBI