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semibin

seqtk

Toolkit for processing sequences in FASTA/Q formats

serratus

Ultra-deep search for novel viruses

showyourwork

Fully reproducible, open source scientific articles in LaTeX.

simplefox

🦊 A Userstyle theme for Firefox minimalist and Keyboard centered.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-workflow-catalog

A statically generated catalog of available Snakemake workflows

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

spades

SPAdes Genome Assembler

srst2

Short Read Sequence Typing for Bacterial Pathogens

sshkit

SSH toolkit: Login, Tunel, Download, Upload, support password and OTP

star

RNA-seq aligner

strainge

strain-level analysis tools

strobemers

A repository for generating strobemers and evalaution

struo2

Scalable creating/updating of metagenome profiling databases

syndna

taxadb

:hatching_chick: locally query the ncbi taxonomy

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit

the-economist-ebooks

经济学人(含音频)、纽约客、自然、新科学人、卫报、科学美国人、连线、大西洋月刊、国家地理等英语杂志免费下载,支持epub、mobi、pdf格式, 每周更新.

tmwr

Code and content for "Tidy Modeling with R"

traitar3

From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)

trust4

TCR and BCR assembly from RNA-seq data

tximeta

Transcript Quantification Import with Automatic Metadata

unicycler

hybrid assembly pipeline for bacterial genomes

unifrac

vamb

Variational autoencoder for metagenomic binning

varlociraptor

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

vircov

Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood:

virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

wfi

whofluIRMA - influenza assembly pipeline