Nextstrain's Projects
Proof-of-principle implementation of a in-browser Nextstrain Narratives editor
Pipeline components for real-time phylodynamic analysis
A collection of modules for molecular epidemiology
Web app for visualizing pathogen evolution
Nextstrain build for avian influenza viruses
Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.
fork for https://github.com/bioconda/bioconda-utils/pull/697
Another (awesome) data explorer for RethinkDB
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
Finds Nextstrain community builds using GitHub's code search.
Testing of community narratives on nextstrain.org
Nextstrain environment for the Conda package manager
Conda package build for nextstrain-base
Coronavirus builds
Nextstrain build for dengue virus
Docker image build for nextstrain/base
Umbrella documentation project for Nextstrain
Nextstrain build for Ebola virus
Emails from Nextstrain.
Enterovirus-D68 phylogenetic analyses code - actively maintained
A convenient Makefile for compiling various versions of FastTree
RethinkDB database to support real-time virus analysis
DB management, APIs, web portals etc.
Flu clade and mutation frequencies
SARS-CoV-2 variant growth rates and frequency forecasts
HBV build