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This repository is archived and contains the content used to build the documentation and splash page found in nextstrain.org. This content can now be found here.

License and copyright

Copyright 2014-2018 Trevor Bedford and Richard Neher.

Source code to Nextstrain is made available under the terms of the GNU Affero General Public License (AGPL). Nextstrain is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

Nextstrain's Projects

infra icon infra

Nextstrain shared infrastructure

ingest icon ingest

Shared internal tooling for pathogen data ingest. Used by our pathogen build repos.

janus icon janus

Build and deploy Nextstrain

lassa icon lassa

Nextstrain build for Lassa virus

mers icon mers

Nextstrain build for MERS-CoV

mpox icon mpox

Nextstrain build for mpox virus

mumps icon mumps

Nextstrain build for mumps virus

narratives icon narratives

Narrative markdown files accessed via nextstrain.org/narratives/x

ncov icon ncov

Nextstrain build for novel coronavirus SARS-CoV-2

ncov-ingest icon ncov-ingest

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

nextclade icon nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

project-board icon project-board

Information and scripts to automate the organization-wide GitHub project board.

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