Topic: phylogenetics Goto Github
Some thing interesting about phylogenetics
Some thing interesting about phylogenetics
phylogenetics,Alignment editor for Mac OS X
User: 4ment
phylogenetics,Python API for the Interactive Tree of Life (iTOL)
User: albertyw
phylogenetics,RAxML Next Generation: faster, easier-to-use and more flexible
User: amkozlov
phylogenetics,𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
Organization: amnh
phylogenetics,Bayesian Evolutionary Analysis Sampling Trees
Organization: beast-dev
Home Page: http://beast.community
phylogenetics,Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
Organization: biocore
phylogenetics,Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
User: biologyguy
phylogenetics,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
phylogenetics,
Organization: c3bi-pasteur-fr
Home Page: https://ngphylogeny.fr/
phylogenetics,Efficient phylogenomic software by maximum likelihood
Organization: cibiv
Home Page: http://www.iqtree.org
phylogenetics,Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
User: cmzmasek
Home Page: https://sites.google.com/site/cmzmasek/home/software/archaeopteryx-js
phylogenetics,forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
User: cmzmasek
Home Page: https://sites.google.com/site/cmzmasek/home/software/forester
phylogenetics,Comparative Genomics Toolkit 3
Organization: cogent3
Home Page: https://cogent3.org
phylogenetics,Bayesian Evolutionary Analysis by Sampling Trees
Organization: compevol
Home Page: www.beast2.org
phylogenetics,An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Organization: datasnakes
Home Page: https://orthoevolution.readthedocs.io/en/master/
phylogenetics,GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Organization: ecogenomics
Home Page: https://ecogenomics.github.io/GTDBTk/
phylogenetics,Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl
Organization: ecojulia
phylogenetics,Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
User: edgardomortiz
phylogenetics,Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Organization: etetoolkit
Home Page: http://etetoolkit.org
phylogenetics,baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
User: evogytis
Home Page: https://phylo-baltic.github.io/baltic-gallery/
phylogenetics,phylogenetics tools for linux (and other mostly posix compliant) computers
Organization: fephyfofum
Home Page: blackrim.org
phylogenetics,Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Organization: hahnlab
Home Page: https://hahnlab.github.io/CAFE/
phylogenetics,Version 5 of the CAFE phylogenetics software
Organization: hahnlab
phylogenetics,BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
User: jamiemcg
phylogenetics,DFOIL: Introgression Testing for Five Taxa
User: jbpease
Home Page: https://peaselab.github.io
phylogenetics,a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/ClipKIT/
phylogenetics,a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/PhyKIT/
phylogenetics,Phylogenetic analysis in R
User: klausvigo
Home Page: http://klausvigo.github.io/phangorn/
phylogenetics,A toolkit for analyzing and visualizing phylogenetic (placement) data
User: lczech
phylogenetics,A library for working with phylogenetic and population genetic data.
User: lczech
Home Page: http://genesis-lib.org/
phylogenetics,Interactive phylogenetic tree viewer/editor
User: lh3
Home Page: https://lh3.sourceforge.io/jstree/
phylogenetics,showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
User: lkremer
phylogenetics,A tool for drawing ANI clustermap between all-vs-all microbial genomes
User: moshi4
phylogenetics,MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Organization: nbisweden
Home Page: http://NBISweden.github.io/MrBayes/
phylogenetics,Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Organization: neherlab
phylogenetics,Nextstrain build for mpox virus
Organization: nextstrain
Home Page: https://nextstrain.org/mpox
phylogenetics,FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
User: niemasd
phylogenetics,Streamlining phylogenomic data gathering, processing and visualization
User: odiogosilva
Home Page: http://odiogosilva.github.io/TriFusion/
phylogenetics,Massively parallel phylogenetic placement of genetic sequences
User: pierrebarbera
phylogenetics,babette is an R package to work with BEAST2
Organization: ropensci
Home Page: https://docs.ropensci.org/babette
phylogenetics,PhyML -- Phylogenetic estimation using (Maximum) Likelihood
User: stephaneguindon
phylogenetics,HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
Organization: sysbiochalmers
phylogenetics,Browser-based utility for phylogenetic tree visualisation.
User: tgvaughan
Home Page: https://icytree.org
phylogenetics,A tool for exploring very large trees in the browser
User: theosanderson
Home Page: http://taxonium.org
phylogenetics,Population-scale genomics
Organization: tskit-dev
phylogenetics,HyPhy: Hypothesis testing using Phylogenies
Organization: veg
Home Page: http://www.hyphy.org
phylogenetics,A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
User: vinuesa
phylogenetics,A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
User: yangwu91
phylogenetics,Ultrafast Sample Placement on Existing Trees
User: yatisht
phylogenetics,Pandas DataFrames for phylogenetics
User: zsailer
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