Topic: phylogenomics Goto Github
Some thing interesting about phylogenomics
Some thing interesting about phylogenomics
phylogenomics,Phylogenomics analyses for 1KFG project
Organization: 1kfg
phylogenomics,The Visualization Multitool for Molecular Epidemiology and Bioinformatics
User: aaboyles
Home Page: https://aaboyles.github.io/MicrobeTrace/
phylogenomics,Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
User: abschneider
Home Page: http://strainhub.io
phylogenomics,An R package to infer and analyze synteny networks from protein sequences
User: almeidasilvaf
Home Page: https://almeidasilvaf.github.io/syntenet/
phylogenomics,Scripts published in: Torres, A., Goloboff, P. A., & Catalano, S. A. (2022). Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology). Cladistics, 38(1), 103-125. doi:10. 1111/cla.12477
User: atorresgalvis
phylogenomics,Two pipelines to perform phylogenomic analysis
User: baileyp1
phylogenomics,The BioJulia package for working with phylogenetic trees and geneologies.
Organization: biojulia
phylogenomics,Clann: constructing consensus trees and supertrees from multiple source trees
User: chriscreevey
phylogenomics,Machete: Automated Likelihood decay indices and Maximum likelihood phlyogeny construction with PAUP*
User: chriscreevey
phylogenomics,Efficient phylogenomic software by maximum likelihood
Organization: cibiv
Home Page: http://www.iqtree.org
phylogenomics,Detection of outlier genes and species in phylogenomics
User: damiendevienne
Home Page: https://damiendevienne.github.io/phylter
phylogenomics,PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
User: dr-joe-wirth
phylogenomics,Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
User: edgardomortiz
Home Page: https://edgardomortiz.github.io/captus.docs/
phylogenomics,Species tree estimation from multi-copy gene trees
User: ekmolloy
phylogenomics,A tool for divide-and-conquer tree estimation via a shared distance matrix
User: ekmolloy
phylogenomics,A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
User: emilhaegglund
phylogenomics,Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
User: faylward
phylogenomics,Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
User: gunzivan28
phylogenomics,An ultrafast and memory efficient tool for phylogenomics
User: hhandika
Home Page: https://segul.app
phylogenomics,BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
User: jamiemcg
phylogenomics,Multisample Variant Format ToolKit
User: jbpease
phylogenomics,Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
User: jlescroart
phylogenomics,a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/ClipKIT/
phylogenomics,a broadly applicable tool for automated gene identification and retrieval
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/orthofisher/
phylogenomics,a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/orthosnap/
phylogenomics,a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/PhyKIT/
phylogenomics,Building a fully automized pipeline for phylogenomic analyses based on the BUSCO toolkit
User: mag-wolf
phylogenomics,An analysis and visualization platform for 'omics data
Organization: merenlab
Home Page: http://merenlab.org/software/anvio
phylogenomics,NGSphy: phylogenomic simulation of next-generation sequencing data
User: merlyescalona
phylogenomics,A tool for drawing ANI clustermap between all-vs-all microbial genomes
User: moshi4
phylogenomics,A tool for plotting CAFE5 gene family expansion/contraction result
User: moshi4
phylogenomics,Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
User: moshi4
phylogenomics,a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
User: natapol
phylogenomics,Hybridization detection using phylogenetic invariants
User: pblischak
Home Page: http://hybridization-detection.readthedocs.io
phylogenomics,Hybridization Detection with Convolutional Neural Networks
User: pblischak
Home Page: https://pblischak.github.io/hyde-cnn
phylogenomics,
Organization: peaselab
phylogenomics,Official Implementation of QT-GILD
User: pythonloader
phylogenomics,common bioinformatic scripts
User: quxiaojian
phylogenomics,rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
User: reslp
Home Page: https://phylociraptor.readthedocs.io
phylogenomics,Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣
User: rowena-h
phylogenomics,Code used to analyse WGS data of giraffe in Coimbra et al. 2021
User: rtfcoimbra
Home Page: https://doi.org/10.1016/j.cub.2021.04.033
phylogenomics,PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
Organization: thebrownlab
phylogenomics,Parsimonious delimitation of large SNP datasets using the four gamete test
User: tkchafin
phylogenomics,:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
User: tseemann
phylogenomics,Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
User: v-z
Home Page: https://github.com/V-Z/sondovac/wiki/
phylogenomics,A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
User: vinuesa
phylogenomics,Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
User: vinuesa
phylogenomics,scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
User: wrf
phylogenomics,Phylogenetic Likelihood Library
User: xflouris
phylogenomics,Workflow for Building Microsynteny Networks
User: zhaotao1987
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