zhaotao1987 Goto Github PK

alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

beluga.jl

Statistical analysis of gene family evolution using phylogenetic birth-death processes

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

graphlayouts

new layout algorithms for network visualizations in R

infomap

Multi-level network clustering based on the Map equation

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

multinetx

multiNetX is a python package for the manipulation and visualization of multilayer networks. It is build on NetworkX

nextdenovo

Fast and accurate de novo assembler for third generation sequencing (TGS) reads

plant_genome_hi-c_scaffolding

snap-python

SNAP Python code, SWIG related files

syn-mrl

Synteny matrix representation with maximum likelihood pipeline

synnet-pipeline

Workflow for Building Microsynteny Networks

taonet

Simulate gene family syntenic networks.

te-search-tools

Python wrappers for programs that search for transposable elements

treematcher

Search flexible patterns within tree structures using regular expression like syntax.