Topic: genotyping Goto Github
Some thing interesting about genotyping
Some thing interesting about genotyping
genotyping,Kmer Analysis of Pileups for Genotyping
User: acenglish
genotyping,One-step genotyping software using a long-read sequencer
User: akikuno
Home Page: https://doi.org/10.1371/journal.pbio.3001507
genotyping,Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.
User: alethere
genotyping,genotyping by Mapping-free ALternate-allele detection of known VAriants
Organization: algolab
Home Page: https://algolab.github.io/malva/
genotyping,A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Organization: algolab
Home Page: https://algolab.github.io/MALVIRUS
genotyping,Benchmarking variant callers for long read data
User: aryarm
genotyping,CONGA: COpy Number Genotyping in Ancient genomes and low-coverage sequencing data
User: asylvz
genotyping,Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.
Organization: baneslab
genotyping,HBVouroboros automates sequencing-based HBV genotyping and expression profiling
Organization: bedapub
genotyping,A method for variant graph genotyping based on exact alignment of k-mers
Organization: bioinformatics-centre
genotyping,This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.
User: biomguler
genotyping,Genotyping MUltiplexed-Sequencing of CRISPR-Localized Editing
User: casanova-lab
genotyping,Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
Organization: cbg-ethz
genotyping,Toolkit for VNTR genotyping and repeat-pan genome graph construction
Organization: chaissonlab
genotyping,Genotyping of segregating mobile elements insertions
User: clemgoub
genotyping,Running codes and data analysis scripts for SNP array comparison paper
User: datngu
genotyping,A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
User: dbespiatykh
Home Page: https://pypi.org/project/tblg/
genotyping,Training material for the use of Germinate
Organization: germinateplatform
Home Page: https://germinateplatform.github.io/germinate-training
genotyping,ROHMMCLI - Flexible HMM based homozygosity predictor.
User: gokalpcelik
Home Page: https://github.com/gokalpcelik/ROHMMCLI
genotyping,A simple python library to identify the most likely strain from the population
Organization: gregor-mendel-institute
Home Page: https://arageno.gmi.oeaw.ac.at/
genotyping,GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
User: grelot
genotyping,Graph realignment tools for structural variants
Organization: illumina
genotyping,An in silico tool to predict Shigella serotypes
User: imanyass
genotyping,A method for circular DNA detection based on probabilistic mapping of ultrashort reads
User: iprada
genotyping,A macOS application for microsatellite genotyping using capillary sequencing data.
User: jeanlain
Home Page: https://doi.org/10.32942/X2X01C
genotyping,Visualisation application for Klebsiella genotypes generated by Kleborate.
Organization: klebgenomics
Home Page: https://kleborate.erc.monash.edu
genotyping,Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data
User: kohyamat
genotyping,Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Organization: medvedevgroup
Home Page: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty641/5056043
genotyping,Graduation Project (2023)
User: mohamed-malk
genotyping,Project to genotype SNV, INDEL and SV.
Organization: msk-access
Home Page: https://genotype-variants.rtfd.io
genotyping,A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/germline/
genotyping,workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
Organization: oicr-gsi
genotyping,Microsatellite genotyping
User: pengjia6
genotyping,Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
Organization: phylo42
genotyping,Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Organization: plantandfoodresearch
genotyping,SV genotyper for long reads with a variation graph
User: sandralouise
genotyping,Pileup biallelic SNPs from single-cell and bulk RNA-seq data
Organization: single-cell-genetics
genotyping,Efficient genotyping bi-allelic SNPs on single cells
Organization: single-cell-genetics
Home Page: https://cellsnp-lite.readthedocs.io
genotyping,Python library for simple and complex indels.
Organization: stjude
Home Page: https://indelpost.readthedocs.io/en/latest/
genotyping,
User: teepean
genotyping,An efficient genetic data imputation pipeline
Organization: transbiozi
genotyping,📢🎯 Generic typing tool from amplicons and/or in silico PCR
User: tseemann
genotyping,:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
User: tseemann
genotyping,Variant calling using a pan-genomic reference, version 3
User: tsnorri
genotyping,R 📦 providing classes and functions to simulate breeding schemes.
Organization: ut-biomet
Home Page: https://ut-biomet.github.io/breedSimulatR/
genotyping, C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Organization: vcflib
Home Page: https://github.com/vcflib/vcflib#vcflib
genotyping,Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
User: wanyuac
genotyping,Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
User: yogionbioinformatics
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