Topic: neuroimaging Goto Github

Some thing interesting about neuroimaging

👇 Here are 687 public repositories matching this topic...

aces / loris

neuroimaging,LORIS is a web-accessible database solution for longitudinal multi-site studies.

Organization: aces

loris neuroinformatics neuroimaging database data-sharing science hacktoberfest

alexlaurence / nifti-image-converter

neuroimaging,🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

User: alexlaurence

Home Page: https://alexlaurence.github.io/NIfTI-Image-Converter/

neuroimaging convert-images medical-imaging converter opencv nifti png matlab python

alxndrkalinin / awesome-deepneuroimage

neuroimaging,A curated list of awesome deep learning applications in the field of neurological image analysis

User: alxndrkalinin

deep-learning neurological-image-analysis neuroimaging deep-neural-networks

antsx / ants

neuroimaging,Advanced Normalization Tools (ANTs)

Organization: antsx

image-registration image-segmentation medical-image-processing neuroimaging

aramis-lab / clinica

neuroimaging,Software platform for clinical neuroimaging studies

Organization: aramis-lab

Home Page: http://www.clinica.run/

neuroimaging python machine-learning brainweb bids-format ants freesurfer fsl mrtrix3 spm

aramis-lab / clinicadl

neuroimaging,Framework for the reproducible processing of neuroimaging data with deep learning methods

Organization: aramis-lab

Home Page: https://clinicadl.readthedocs.io/

python alzheimer-disease deep-learning pytorch neuroimaging convolutional-neural-network medical-imaging brain-imaging

athenaepi / dmipy

neuroimaging,The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Organization: athenaepi

diffusion-mri microstructure-estimation reproducible-research noddi noddi-bingham axcaliber spherical-mean-technique multi-compartment-modeling multi-shell multi-echo-time

bids-standard / bids-examples

neuroimaging,A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Organization: bids-standard

Home Page: http://bids-standard.github.io/bids-examples/

bids dataset data-standards standards neuroimaging

bids-standard / bids-specification

neuroimaging,Brain Imaging Data Structure (BIDS) Specification

Organization: bids-standard

Home Page: https://bids-specification.readthedocs.io/

bids neuroimaging data-standards standards

bids-standard / bids-validator

neuroimaging,Validator for the Brain Imaging Data Structure

Organization: bids-standard

Home Page: https://bids-standard.github.io/bids-validator/

bids neuroimaging data-validation

braindecode / braindecode

neuroimaging,Deep learning software to decode EEG, ECG or MEG signals

Organization: braindecode

Home Page: https://braindecode.org/

deep-learning eeg electroencephalogram electroencephalography neuroimaging neuroscience python pytorch meg magnetoencephalography

brainiak / brainiak

neuroimaging,Brain Imaging Analysis Kit

Organization: brainiak

Home Page: http://brainiak.org

neuroscience fmri machine-learning distributed neuroimaging

cwatson / braingraph

neuroimaging,Graph theory analysis of brain MRI data

User: cwatson

graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks

neuroimaging,DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Organization: dipy

Home Page: https://dipy.org

diffusion-mri dti tractography tractometry registration denoising spherical-harmonics dki tracking contextual-enhancement

dltk / dltk

neuroimaging,Deep Learning Toolkit for Medical Image Analysis

Organization: dltk

Home Page: https://dltk.github.io/

deep-learning machine-learning neural-networks tensorflow medical-imaging data-science ml deep-neural-networks python medical

donders-institute / bidscoin

neuroimaging,BIDScoin converts your source-level neuroimaging data to BIDS

Organization: donders-institute

Home Page: https://bidscoin.readthedocs.io

bids mri neuroimaging dicom pet imaging data-sharing multi-echo multi-echo-combine brain-imaging

fieldtrip / fieldtrip

neuroimaging,The MATLAB toolbox for MEG, EEG and iEEG analysis

Organization: fieldtrip

Home Page: http://www.fieldtriptoolbox.org

meg eeg ecog analysis matlab dipole beamformer statistics time-frequency connectivity

freesurfer / freesurfer

neuroimaging,Neuroimaging analysis and visualization suite

Organization: freesurfer

freesurfer neuroimaging mri lcn

gallantlab / pycortex

neuroimaging,Pycortex is a python-based toolkit for surface visualization of fMRI data

Organization: gallantlab

Home Page: https://gallantlab.github.io/pycortex

fmri surface-visualization python neuroimaging

jcreinhold / intensity-normalization

neuroimaging,normalize the intensities of various MR image modalities

User: jcreinhold

mri neuroimaging normalization intensity-normalization ravel fcm whitestripe standardization harmonization zscore

jfortin1 / neurocombat

neuroimaging,Harmonization of multi-site imaging data with ComBat (Python)

User: jfortin1

harmonization combat python neuroimaging multi-site-imaging mri-images normalization

josedolz / livianet

neuroimaging,This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

User: josedolz

cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano

learn-neuroimaging / hitchhackers_guide_brain

neuroimaging,A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

Organization: learn-neuroimaging

Home Page: https://learn-neuroimaging.github.io/hitchhackers_guide_brain/

brainweb neuroimaging meg eeg pet mri

maartenmennes / ica-aroma

neuroimaging,ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

User: maartenmennes

python ica fsl data-driven neuroimaging artefacts removal

makism / dyconnmap

neuroimaging,A dynamic connectome mapping module in python.

User: makism

neuroimaging eeg fmri meg connectivity time-varying graphs fc-states dynamic functional-connectivity

me-ica / tedana

neuroimaging,TE-dependent analysis of multi-echo fMRI

Organization: me-ica

Home Page: https://tedana.readthedocs.io

python fmri neuroimaging brain-imaging

mica-mni / brainstat

neuroimaging,A statistics and context decoding toolbox for neuroimaging.

Organization: mica-mni

Home Page: https://brainstat.readthedocs.io

neuroimaging statistics python matlab

mica-mni / enigma

neuroimaging,The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Organization: mica-mni

Home Page: https://enigma-toolbox.readthedocs.io

enigma mri neuroimaging open-source multisite awesome visualization multiscale analysis life-changing-magic

mikeroyal / neuromorphic-computing-guide

neuroimaging,Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.

User: mikeroyal

neuromorphic-computing neuromorphic-hardware neuromorphic-engineering neuromorphic neural-networks neural-engine neural-engineering neural-network neuronal-network neural-machine-translation

miykael / nipype_tutorial

neuroimaging,Learn Nipype with these tutorial notebooks - go here to see them online -->

User: miykael

Home Page: https://miykael.github.io/nipype_tutorial

python neuroimaging nipype-tutorial workflow

mne-tools / mne-bids

neuroimaging,MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Organization: mne-tools

Home Page: https://mne.tools/mne-bids/

bids mne magnetoencephalography electroencephalography ieeg eeg meg neuroscience neuroimaging

mne-tools / mne-python

neuroimaging,MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Organization: mne-tools

Home Page: https://mne.tools

python neuroscience electroencephalography magnetoencephalography electrocorticography machine-learning statistics visualization eeg meg

netneurolab / neuromaps

neuroimaging,A toolbox for comparing brain maps

Organization: netneurolab

Home Page: https://netneurolab.github.io/neuromaps

brain-imaging hacktoberfest neuroimaging python

neuronets / nobrainer

neuroimaging,A framework for developing neural network models for 3D image processing.

Organization: neuronets

medical-imaging semantic-segmentation tensorflow neuroimaging machine-learning

neuroneural / brainchop

neuroimaging,Brainchop: In-browser 3D MRI rendering and segmentation

Organization: neuroneural

Home Page: https://neuroneural.github.io/brainchop/

deep-learning 3d-segmentation frontend-app javascript neuroimaging pyodide tensorflowjs three-js medical-imaging mri

neurostuff / nimare

neuroimaging,Coordinate- and image-based meta-analysis in Python

Organization: neurostuff

Home Page: https://nimare.readthedocs.io

meta-analysis python neuroimaging

nilearn / nilearn

neuroimaging,Machine learning for NeuroImaging in Python

Organization: nilearn

Home Page: http://nilearn.github.io

python machine-learning fmri neuroimaging mvpa decoding brain-connectivity brain-imaging brain-mri

nipreps / fmriprep

neuroimaging,fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Organization: nipreps

Home Page: https://fmriprep.org

fmri fmri-preprocessing brain-imaging neuroimaging bids image-processing

nipreps / mriqc

neuroimaging,Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

Organization: nipreps

Home Page: http://mriqc.readthedocs.io

mri quality-control quality-reporter machine-learning neuroimaging

nipy / nibabel

neuroimaging,Python package to access a cacophony of neuro-imaging file formats

Organization: nipy

Home Page: http://nipy.org/nibabel/

python neuroimaging brain-imaging nifti gifti cifti-2 streamlines data-formats dicom tck

nipy / nipype

neuroimaging,Workflows and interfaces for neuroimaging packages

Organization: nipy

Home Page: https://nipype.readthedocs.org/en/latest/

python workflow-engine brain-imaging big-data dataflow data-science dataflow-programming neuroimaging brainweb

nitrain / nitrain

neuroimaging,Train AI models efficiently on medical images using any framework

Organization: nitrain

pytorch deep-learning keras neuroimaging medical-imaging

openneuroorg / openneuro

neuroimaging,A free and open platform for analyzing and sharing neuroimaging data

Organization: openneuroorg

Home Page: https://openneuro.org/

neuroimaging neuroscience react graphql datasets bids

raamana / neuropredict

neuroimaging,Easy and comprehensive assessment of predictive power, with support for neuroimaging features

User: raamana

Home Page: https://raamana.github.io/neuropredict/

neuroimaging machine-learning structural-imaging anatomical-mri cross-validation functional-connectivity tractography tract-based-statistics resting-state pattern-recognition