Topic: mri Goto Github

👇 Here are 825 public repositories matching this topic...

antsx / antsr
mri,R interface to the ANTs biomedical image processing library
Organization: antsx
Home Page: https://antsx.github.io/ANTsR
brain registration segmentation decomposition mri r

ccipd / mrqy
mri,MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Organization: ccipd
mri quality-control quality-assurance quality-metrics imaging machine-learning medical-imaging medical-image-processing medical-physics python

cwatson / braingraph
mri,Graph theory analysis of brain MRI data
User: cwatson
graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks

d-unsed / ruru
mri,Native Ruby extensions written in Rust
User: d-unsed
native-ruby-extensions ruby rust mri ruru

davidiommi / pytorch--3d-medical-images-segmentation--salmon
mri,Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.
User: davidiommi
Home Page: https://zmpbmt.meduniwien.ac.at/wissenschaft-forschung/qimp/
segmentation monai organs pytorch unet-pytorch unet unet-3d deep-learning monai-toolbox nnunet transformers unetr mri

deepinv / deepinv
mri,PyTorch library for solving imaging inverse problems using deep learning
Organization: deepinv
Home Page: https://deepinv.github.io
computational-imaging deep-learning image-processing computed-tomography deblurring inverse-problems mri super-resolution deep-equilibrium-models plug-and-play

donders-institute / bidscoin
mri,BIDScoin converts your source-level neuroimaging data to BIDS
Organization: donders-institute
Home Page: https://bidscoin.readthedocs.io
bids mri neuroimaging dicom pet imaging data-sharing multi-echo multi-echo-combine brain-imaging

facebookresearch / fastmri
mri,A large-scale dataset of both raw MRI measurements and clinical MRI images.
Organization: facebookresearch
Home Page: https://fastmri.org
fastmri mri deep-learning mri-reconstruction convolutional-neural-networks fastmri-dataset fastmri-challenge pytorch medical-imaging

firasgit / medicaldiffusion
mri,Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis
User: firasgit
ct diffusion-models machine-learning mri

freesurfer / freesurfer
mri,Neuroimaging analysis and visualization suite
Organization: freesurfer
freesurfer neuroimaging mri lcn

guillaumefrd / brain-tumor-mri-dataset
mri,Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.
User: guillaumefrd
data dataset mri mri-images brain classification segmentation detection tumor python

himashi92 / vt-unet
mri,[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation
User: himashi92
transformer 3d-medical-imaging-segmentation tumor-segmentation volumetric-transformer deep-learning pytorch-implementation pure-transformer pytorch segmentation mri

icon-lab / resvit
mri,Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis
Organization: icon-lab
deep-learning image-synthesis medical-imaging residual-learning transformers image-to-image-translation mri vision-transformer attention

imatge-upc / 3d-gan-superresolution
mri,3D super-resolution using Generative Adversarial Networks
Organization: imatge-upc
gan super-resolution mri brain

imr-framework / pypulseq
mri,Pulseq in Python
User: imr-framework
Home Page: https://pypulseq.readthedocs.io
pulse-sequences pulseq mri python mri-sequences

jcreinhold / intensity-normalization
mri,normalize the intensities of various MR image modalities
User: jcreinhold
mri neuroimaging normalization intensity-normalization ravel fcm whitestripe standardization harmonization zscore

jefffessler / mirt.jl
mri,MIRT: Michigan Image Reconstruction Toolbox (Julia version)
User: jefffessler
Home Page: https://jefffessler.github.io/MIRT.jl/dev/
image-reconstruction julia tomography mri inverse-problems nufft sinogram k-space lasso sparse-coding

jibikbam / cnn-3d-images-tensorflow
mri,3D image classification using CNN (Convolutional Neural Network)
User: jibikbam
3d classification cnn convolutional-neural-networks dti medical mri neural-network nifti tensorflow

josedolz / livianet
mri,This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
User: josedolz
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano

jrieke / cnn-interpretability
mri,🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease
User: jrieke
alzheimer-disease-prediction alzheimers-disease cnn convolutional-neural-networks deep-learning interpretability interpretable-machine-learning machine-learning medical-imaging mri visualization-methods

js3611 / deep-mri-reconstruction
mri,Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo
User: js3611
deep-learning convolutional-neural-networks deep-neural-networks compressed-sensing mri image-reconstruction

juliahealth / komamri.jl
mri,Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.
Organization: juliahealth
Home Page: https://JuliaHealth.github.io/KomaMRI.jl
mri simulation diffusion diffusion-mri cardiac gpu-acceleration

kondratevakate / mri-deep-learning-tools
mri,Resurces for MRI images processing and deep learning in 3D
User: kondratevakate
classification detection medical-imaging mri pytorch segmentation

larsonlab / mri-education-resources
mri,Resources for learning the principles of magnetic resonance imaging (MRI)
Organization: larsonlab
Home Page: https://larsonlab.github.io/MRI-education-resources
mri magnetic-resonance-imaging

learn-neuroimaging / hitchhackers_guide_brain
mri,A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
Organization: learn-neuroimaging
Home Page: https://learn-neuroimaging.github.io/hitchhackers_guide_brain/
brainweb eeg meg mri neuroimaging pet

linhandev / dataset
mri,医学影像数据集列表 『An Index for Medical Imaging Datasets』
User: linhandev
Home Page: https://linhandev.github.io/posts/Medical-Dataset/
dataset medical-imaging ct mri tcia qin-lung-ct msd 4d-lung qin-prostate-repeatability grand-challenge

mehrdad-noori / brain-tumor-segmentation
mri,Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
User: mehrdad-noori
attention-mechanism brain-tumor-segmentation brats deep-learning keras mri multi-view tensorflow2 u-net

mica-mni / enigma
mri,The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Organization: mica-mni
Home Page: https://enigma-toolbox.readthedocs.io
enigma mri neuroimaging open-source multisite awesome visualization multiscale analysis life-changing-magic

mica-mni / micapipe
mri,micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Organization: mica-mni
Home Page: http://micapipe.readthedocs.io
mri connectome multimodal imageprocessing bids neuroimaging microstructure resting-state diffusion-mri awesome

mikgroup / sigpy
mri,Python package for signal processing, with emphasis on iterative methods
Organization: mikgroup
signal-processing compressed-sensing iterative-algorithms mri reconstruction machine-learning gpu optimization nufft rf-pulse-design

mmuckley / torchkbnufft
mri,A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
User: mmuckley
Home Page: https://torchkbnufft.readthedocs.io/
mri deep-learning nufft pytorch reconstruction

mribri999 / mrsignalsseqs
mri,Stanford University Rad229 Class Code: MRI Signals and Sequences
User: mribri999
Home Page: http://web.stanford.edu/class/rad229
mri mri-signals epg bloch spiral epi gridding matrix matlab

mrirecon / bart
mri,BART: Toolbox for Computational Magnetic Resonance Imaging
Organization: mrirecon
Home Page: https://mrirecon.github.io/bart/
bart-toolbox compressed-sensing computational-imaging deep-learning iterative-methods mri

neuroneural / brainchop
mri,Brainchop: In-browser 3D MRI rendering and segmentation
Organization: neuroneural
Home Page: https://neuroneural.github.io/brainchop/
deep-learning 3d-segmentation frontend-app javascript neuroimaging pyodide tensorflowjs three-js medical-imaging mri

nipreps / mriqc
mri,Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Organization: nipreps
Home Page: http://mriqc.readthedocs.io
mri quality-control quality-reporter machine-learning neuroimaging

nipreps / smriprep
mri,Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Organization: nipreps
Home Page: https://nipreps.github.io/smriprep
mri structural-mri surface-reconstruction image-processing image-registration image-segmentation

nyumedml / cnn_design_for_ad
mri,Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"
Organization: nyumedml
alzheimer-disease artificial-intelligence brain-mri clinical-data convolutional-neural-networks deep-learning dementia medical-imaging mild-cognitive-impairment mri

ofgulban / segmentator
mri,3D MRI data exploration and segmentation tool.
User: ofgulban
Home Page: https://github.com/ofgulban/segmentator/wiki
mri segmentation 2dhistograms gradient-magnitude

qmrlab / qmrlab
mri,Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
Organization: qmrlab
Home Page: https://qmrlab.org
mri analysis data-simulation quantitative magnetization relaxometry mapping qmri quantitative-mri magnetic-resonance-imaging

quqixun / brainprep
mri,Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
User: quqixun
brain mri preprocessing fsl registration skull-stripping brain-segmentation ants enhancement bias-field-correction

rl4m / pcrlv2
mri,An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
Organization: rl4m
ct-scans medical-image-analysis mri self-supervised-learning x-ray

rordenlab / dcm2niix
mri,dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Organization: rordenlab
Home Page: https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage
dicom nifti mri mri-images research neuroscience neuroimaging jpeg-image jpeg dicom-images dcm nii gz nitrc dcm2niix mricrogl bids-format nifti-format

ruby / setup-ruby
mri,An action to download a prebuilt Ruby and add it to the PATH in 5 seconds
Organization: ruby
Home Page: https://github.com/marketplace/actions/setup-ruby-jruby-and-truffleruby
mri jruby truffleruby actions prebuilt-ruby prebuilt-rubies ruby-action

shopify / yjit
mri,Optimizing JIT compiler built inside CRuby
Organization: shopify
jit codegen ruby cruby jit-compiler bytecode mri ruby-jit compiler

spinalcordtoolbox / spinalcordtoolbox
mri,Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
Organization: spinalcordtoolbox
Home Page: https://spinalcordtoolbox.com
mri neuroimage python spinalcord

stefandenn3r / unsupervised_anomaly_detection_brain_mri
mri,Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
User: stefandenn3r
deep-learning unsupervised-learning anomaly-detection segmentation mri gan autoencoder variational-autoencoder

thomaskuestner / cs_moco_lab
mri,Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system
User: thomaskuestner
Home Page: https://sites.google.com/site/kspaceastronauts
mri compressed-sensing motion-correction siemens gadgetron matlab cs-moco-lab

tom-lord / regexp-examples
mri,Generate strings that match a given regular expression
User: tom-lord
ruby regexp mri data-generation random-string

washington-university / workbench
mri,Connectome Workbench
Organization: washington-university
Home Page: http://www.humanconnectome.org/software/get-connectome-workbench.html
c-plus-plus neuroscience mri cifti nifti gifti

zaccharieramzi / fastmri-reproducible-benchmark
mri,Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.
User: zaccharieramzi
Home Page: https://fastmri.org/leaderboards
fastmri mri-reconstruction fastmri-dataset neural-network tensorflow convolutional-neural-networks mri fastmri-challenge unrolled-reconstruction-algorithm