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assembly-artifacts-paper-experiments

bioinformatics_submission_guides

Bioinformatics Journal Guides

bloomtree-allsome

Sequence Bloom Trees with All/Some split

bubbz

cnfind

contigvalidator

It outputs the alignment of an assembler using simple exact matching and bwa mem

directed-unitigs

eskemap

Sources for sketch-based all-hits read mapping paper

esscolor

esscompress

howdesbt

Sequence Bloom Tree, supporting determined/how split filters

internal

isvda

iterative small variant detecting algorithm

mashmap

A fast approximate aligner for long DNA sequences

minimizer-jaccard-estimator

Support for minimizer Jaccard estimator

mutation-rate-intervals

Support for "statistics of k-mers from a sequence undergoing a simple mutation process without spurious matches"

pla-complexity-figures

pla-index

refpluspipeline

sbtplaydata

Very small examples for testing Sequence Bloom Trees and similar data structures

sibeliaz

A fast whole-genome aligner based on de Bruijn graphs

test

This is an empty repository for the purposes of figuring out how github works

twopaco

A fast constructor of the compressed de Bruijn graph from many genomes

ust

vargeno

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

vargeno_lite

Memory Lite version of VarGeno

varmatch

robust matching of small variant datasets using flexible scoring schemes