Topic: structural-variation Goto Github
Some thing interesting about structural-variation
Some thing interesting about structural-variation
structural-variation,Structural variant toolkit for VCFs
User: acenglish
structural-variation,kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
User: akcorut
Home Page: https://github.com/akcorut/kGWASflow/wiki
structural-variation,Merging, Annotation, Validation, and Illustration of Structural variants
Organization: bcgsc
Home Page: http://mavis.bcgsc.ca
structural-variation,Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
Organization: bio-ontology-research-group
structural-variation,A method for variant graph genotyping based on exact alignment of k-mers
Organization: bioinformatics-centre
structural-variation,A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/germline-DNA/
structural-variation,A structural variation pipeline for short-read sequencing
Organization: broadinstitute
structural-variation,GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
User: cgroza
structural-variation,Support Vector Structural Variation Genotyper
User: dantaki
structural-variation,DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Organization: dellytools
structural-variation,Structural variant VCF annotation, duplicate removal and comparison
Organization: dellytools
structural-variation,Allele-specific copy number estimation with whole genome sequencing
Organization: dkfz-odcf
Home Page: http://aceseq.readthedocs.io
structural-variation,Linear-time, low-memory construction of variation graphs
User: edawson
structural-variation,Structural variation caller using third generation sequencing
User: fritzsedlazeck
structural-variation,Method to optimally select samples for validation and resequencing
User: fritzsedlazeck
structural-variation,An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
User: fungest
structural-variation,A straightforward and complete next-generation sequencing read simulator
Organization: galantelab
Home Page: https://galantelab.github.io/sandy/
structural-variation,Pipeline for structural variation detection in cohorts
Organization: hall-lab
structural-variation,Tools for processing and analyzing structural variants.
Organization: hall-lab
structural-variation,Structural variant and indel caller for mapped sequencing data
Organization: illumina
structural-variation,Graph realignment tools for structural variants
Organization: illumina
structural-variation,What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
Organization: illumina
structural-variation,A method for circular DNA detection based on probabilistic mapping of ultrashort reads
User: iprada
structural-variation,The Modular Aligner and The Modular SV Caller
Organization: itbe-lab
structural-variation,Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
Organization: kccg
structural-variation,Toolkit for calling structural variants using short or long reads
User: kcleal
structural-variation,Population-wide Deletion Calling
Organization: kehrlab
structural-variation,SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
Organization: kingsford-group
structural-variation,Upscaling SV detection to a multi-population level.
User: mattravenhall
structural-variation,
User: mehelmy
structural-variation,A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
User: mehrdadbakhtiari
Home Page: http://advntr.readthedocs.io/
structural-variation,Python package to annotate and visualize gene fusions.
User: murphycj
Home Page: https://www.agfusion.app
structural-variation,Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Organization: nanoporetech
structural-variation,Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Organization: oshlack
structural-variation,iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
User: rhshah
Home Page: http://iannotatesv.readthedocs.org/en/latest/index.html
structural-variation,A Framework to call Structural Variants from NGS based datasets
User: rhshah
Home Page: http://icallsv.readthedocs.io/en/latest/
structural-variation,MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
User: samtobam
structural-variation,A Python package for pharmacogenomics (PGx) research
User: sbslee
Home Page: https://pypgx.readthedocs.io
structural-variation,Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
User: smehringer
structural-variation,Fast and accurate gene fusion detection from RNA-Seq data
User: suhrig
structural-variation,Complex structural variant detection from WGS data
Organization: suwonglab
structural-variation,Long read based human genomic structural variation detection with cuteSV
User: tjianghit
structural-variation,A tutorial on structural variant calling for short read sequencing data
User: tobiasrausch
Home Page: https://www.youtube.com/watch?v=zO9WCOaq3aQ
structural-variation,Identification of segmental duplications in the genome
Organization: vpc-ccg
structural-variation,Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
Organization: vpc-ccg
structural-variation,A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
User: xiaotaowang
structural-variation,SNP-Assisted SV Calling and Phasing Using ONT
User: yekaizhou
structural-variation,simuG: a general-purpose genome simulator
User: yjx1217
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