Xiaotao Wang's Projects
Scripts and data used to generate figures for the 4DN joint analysis flagship paper
A topic-centric list of high-quality open datasets in public domains. Propose NEW data ☛☛☛PR☛☛☛
Data and the co-authored network I extracted for lab selection in 3D genome research field
Conda recipes for the bioconda channel.
A hierarchical domain caller for Hi-C data based on a modified version of Directionality Index
A cool place to store your Hi-C
List of Computer Science courses with video lectures.
A Python implementation of the original DI domain caller
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
:books: Freely available programming books
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Python library for generating Sudoku puzzles of different grades
Gene Set Enrichment Analysis in Python
An easy-to-use Hi-C data processing software supporting distributed computation.
A fast and efficient tool for converting chromatin interaction data between genome assemblies
A Python implementation for BH-FDR and HiCCUPS
Python module to perform under sampling and over sampling with various techniques.
Little scripts written on a whim
chia pet analysis software
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Python NGS Repository
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
Genome-wide contact analysis using sklearn
Fast, flexible and easy to use probabilistic modelling in Python.
Python solutions for Project Euler
Python interface to ensembl reference genome metadata (exons, transcripts, etc...)
All Algorithms implemented in Python
A short tutorial on how to use RSEM
structural variant calling and genotyping with existing tools, but, smoothly.