Topic: gatk-bestpractices Goto Github
Some thing interesting about gatk-bestpractices
Some thing interesting about gatk-bestpractices
gatk-bestpractices,Whole exome sequencing snakemake workflow based on GATK best practice
User: abdelrahmanyahia
gatk-bestpractices,A pipeline that calls variants on a group of BAM files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/gatk-variantcalling
gatk-bestpractices,A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/germline-DNA/
gatk-bestpractices,A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/RNA-seq/
gatk-bestpractices,Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
User: digo4
gatk-bestpractices,A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Organization: esr-nz
gatk-bestpractices,GATK WGS workflow
User: laura-budurlean
Home Page: https://github.com/laura-budurlean/GATK-WGS-Pipeline
gatk-bestpractices,An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
User: nickhir
gatk-bestpractices,VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
User: rhettrautsaw
gatk-bestpractices,Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.
User: sbresnahan
Home Page: http://seantbresnahan.com/TexasCancerGenomics/
gatk-bestpractices,Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
Organization: sydney-informatics-hub
gatk-bestpractices,Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
User: tdayris
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