nickhir Goto Github PK

clustermonitor

Very simple script which logs the CPU and RAM usage of the submitted job.

dgevistools

Small R package with some functions to visualize DGE results downstream of DESeq2

genotypeimputationworkflow

An easy to use workflow to impute genotypes using the Michigan Imputation Server and the Haplotype Reference Consortium.

germlinemutationcalling

An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files

ggvenndiagram

A 'ggplot2' implement of Venn Diagram.

interactive-digit-recognition

Combination of pygame and keras to recognize digitally written digits.

interactivemanhattan

Simple Shiny app, which can be used to interactively generate Manhattan plots

locuszoomr

A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.

magic_frame

masterthesis

Contains the code to reproduce all figures from my Master Thesis.

milor

R package implementation of Milo for testing for differential abundance in KNN graphs

oxldl

phrasebase

Program which searches through thousands of papers and tries to match a certain input string

pseudotimede

A robust DE test method that accounts for the uncertainty in pseudotime inference

pyfilemv

Alternative for unix 'mv', which searches through your files and updates any references to the file that you just moved.

redditlookoutbot

Very simple Reddit bot which monitors submissions and comments in user defined subreddits and extracts relevant posts/comments based on the occurrence of keywords. .

scent

Estimation of Single-Cell Potency with Single Cell Entropy