tdayris Goto Github PK
Name: tdayris
Type: User
Company: Institut Gustave Roussy
Bio: Bioinformatician at Gustave Roussy
Location: Paris
Name: tdayris
Type: User
Company: Institut Gustave Roussy
Bio: Bioinformatician at Gustave Roussy
Location: Paris
Snakemake pipeline for Epicure analyses
Several templates for Open-on-demand and procedures
Perform Cytoscans/Oncoscans CNV analysis with EaCoN
A c++ project for translating c++ in many languages (including std) (it is a joke)
Easy Copy Number !
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
A cookiecutter for sharable Conda-environments among IGR infrastructure
Snakemake workflow used to analyse bisulfite treated sequencing with Bismark
Align reads over a reference genome, filter aligned-reads, and mark duplicates
Snakemake workflow designed to call CNV using Facets
Perform basic QC over sequenced data
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
Snakemake workflow used to call somatic variants with GATK Mutect2
Download and index Ensembl sequences and annotations
Snakemake workflow used to call peaks with Macs2
Snakemake workflow used to call differentially expressed genes with DESeq2 on bulk RNA-Seq.
Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon
Sanekamke workflow used to align reads with STAR
Snakemake workflow used to download iRODS data and prepare sample description on Gustave Roussy's Flamingo cluster
a miniconda docker/singularity image with strict channels priorities by default
These are my snakefiles for each projects
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
A supplementary for singleCellTK, filling some "holes" (empty droplets filtering, cell cycle scoring)
Interactively analyze single cell genomic data
This is the development home of the workflow management system Snakemake. For general information, see
Snakemake plugin executor with special values for GUstave Roussy's Flamingo
Utility functions and classes shared between Snakemake wrappers
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.