Topic: ngs-analysis Goto Github
Some thing interesting about ngs-analysis
Some thing interesting about ngs-analysis
ngs-analysis,R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
User: adrientaudiere
Home Page: https://adrientaudiere.github.io/MiscMetabar/
ngs-analysis,A toolkit for NGS analysis with Python
User: afrendeiro
Home Page: http://ngs-toolkit.readthedocs.io
ngs-analysis,This tutorial is created for educational purpose
User: amarinderthind
ngs-analysis,Utilities for analyzing next generation sequencing data.
Organization: angsd-wrapper
ngs-analysis,Flexible analysis of high-content CRISPR screening
Organization: arcinstitute
Home Page: https://screenpro2.rtfd.io
ngs-analysis,Cobalt is a tool to detect copy-number variants from next generation sequencing (NGS) data
Organization: arup-ngs
ngs-analysis,is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Organization: bu-isciii
Home Page: https://github.com/BU-ISCIII/iSkyLIMS/wiki
ngs-analysis,PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Organization: bu-isciii
Home Page: https://github.com/BU-ISCIII/plasmidID/wiki
ngs-analysis,生物信息学项目实践仓库🏆🥇
User: candlelight-xyj
ngs-analysis,Tools for analyzing NGS sequence data and aligned protein sequences
User: cchrysostomou
Home Page: http://cchrysostomou.github.io/seqtables/html/index.html
ngs-analysis,deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data
User: cma2015
Home Page: https://cma2015.github.io/deepEA
ngs-analysis,群体遗传学分析中用到的script和skill等
User: crazzy-rabbit
ngs-analysis,Multple methods for BSA Pipeline
User: czheluo
ngs-analysis,R/Bioconductor package for e/iCLIP data analysis
Organization: embl-hentze-group
ngs-analysis,Using combined evidence from replicates to evaluate ChIP-seq peaks
Organization: genometric
Home Page: https://genometric.github.io/MSPC/
ngs-analysis,Metagenomic pipeline and other general scripts used in the lab.
Organization: geo-omics
Home Page: https://sites.lsa.umich.edu/geomicro/
ngs-analysis,TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
Organization: githbdx
Home Page: https://www.transforna.com
ngs-analysis,Publication quality NGS track plotting
User: harbourlab
ngs-analysis,SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
User: hyunhwan-jeong
ngs-analysis,A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Organization: jhuanglab
ngs-analysis,Protein Analysis and Classifier Toolkit
User: jklesmith
ngs-analysis,Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
Organization: mccoy-lab
ngs-analysis,SEAL db - Simple, Efficient And Lite database for NGS
Organization: mobidic
ngs-analysis,Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
Organization: mskcc
ngs-analysis,Workshop • Intro to Bioinformatics using NGS data • 5 days
Organization: nbisweden
Home Page: https://NBISweden.github.io/workshop-ngsintro
ngs-analysis,A QC pipeline for SVs calls based on coverage and SNP calls
Organization: ncbi-hackathons
ngs-analysis,A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Organization: ncbi
ngs-analysis,Project Manager for NGS data analysis
Organization: ncbi
ngs-analysis,The ChIP-Seq peak calling algorithm using convolution neural networks
User: odb9402
ngs-analysis,Genomic interval operations on Pandas DataFrames
Organization: open2c
ngs-analysis,RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Organization: pavlidislab
ngs-analysis,Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
User: praneet1988
ngs-analysis,Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR
User: praneet1988
ngs-analysis,RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
User: rezabehboudi
ngs-analysis,A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/AmpliGone/
ngs-analysis,SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/SARS2seq/
ngs-analysis,TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/TrueConsense/
ngs-analysis,Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
User: rptashkin
ngs-analysis,SIB course that introduces analysis of NGS data
Organization: sib-swiss
Home Page: https://sib-swiss.github.io/NGS-introduction-training/
ngs-analysis,GitHub for the SIB courses NGS - Genome variant analysis
Organization: sib-swiss
Home Page: https://sib-swiss.github.io/NGS-variants-training/
ngs-analysis,:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
User: slowkow
ngs-analysis,Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
Organization: soedinglab
Home Page: https://bammmotif.mpibpc.mpg.de/
ngs-analysis,Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
Organization: southgreenplatform
Home Page: http://toggle.southgreen.fr
ngs-analysis,A tool to extract mappable reads from various library preparation protocols.
User: timolassmann
ngs-analysis,R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
User: tomkellygenetics
ngs-analysis,A python package storing different tools for different NGS operations
User: wckdouglas
Home Page: https://sequencing-tools.readthedocs.io/en/latest/
ngs-analysis,HemTools: a collection of NGS pipelines and bioinformatic analyses
User: yichaoou
Home Page: https://hemtools.readthedocs.io
ngs-analysis,A flexible, automation and pragmatic workflow tool to process the NGS data.
User: zhanghao-njmu
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