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agg

gvcf aggregation tool

akt

Ancestry and Kinship Tools

bammetrics

Efficient and accurate metrics from aligned reads - mismatch rate, percent proper pairs, etc.

basespace_clarity_lims

API libraries, application examples, and custom tools for BaseSpace Clarity LIMS

beadarrayfiles

Python library to parse file formats related to Illumina bead arrays

blockcompression

Block compression library used by Nirvana

cacheutils

Creates new Nirvana gene & transcript cache files

canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

cyrius

A tool to genotype CYP2D6 with WGS data

dragen-aws-batch-quickstart

dragen-azure-quickstart

dragmap

DRAGEN open-source mapper

expansionhunter

A tool for estimating repeat sizes

expansionhunterdenovo

A suite of tools for detecting expansions of short tandem repeats

gauchian

A variant caller for the GBA gene using WGS data

gffcreator

Creates GFF files from Nirvana cache files

graphalignmentviewer

gtctovcf

Script to convert GTC/BPM files to VCF

gvcfgenotyper

A utility for merging and genotyping Illumina-style GVCFs.

hap.py

Haplotype VCF comparison tools

happycompare

Reporting toolbox for happy output

happyr

R tools to interact with hap.py output

ica-sdk-python

illuminaconnectedannotationsdocumentation

interop

C++ Library to parse Illumina InterOp files

isaac2

Aligner for sequencing data

isaac3

Aligner for sequencing data

isaac4

Isaac aligner version 4

licenses

manta

Structural variant and indel caller for mapped sequencing data