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View Code? Open in Web Editor NEWA variant caller for the GBA gene using WGS data
License: Other
A variant caller for the GBA gene using WGS data
License: Other
When running with .cram file, got the following warnings
/gauchian/depth_calling/snp_count.py:131: UserWarning: multiple_iterators not implemented for CRAM ignore_orphan=False
/gauchian/depth_calling/haplotype.py:189: UserWarning: multiple_iterators not implemented for CRAM min_base_quality=13
Will these warnings affect the quality of calls?
thanks for the program!
i checked my bam file and had to convert it (1->chr1) and add an index with samtools, then everything run fine.
i do not know how to interpret the number in the results CN(GBA+GBAP1)?
The setup.py did not include gauchian.caller & gauchian.depth_calling
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