Topic: cancer Goto Github
Some thing interesting about cancer
Some thing interesting about cancer
cancer,A Slicer extension to provide a GUI around pyradiomics
Organization: aim-harvard
cancer,Cancer Whitepaper
User: albinsjolin
Home Page: https://albinsjolin.github.io/cancer-whitepaper/
cancer,R package to work with ctDNA sequencing data
User: alkodsi
Home Page: https://alkodsi.github.io/ctDNAtools/
cancer,A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Organization: ampliconsuite
cancer,Provide R access to the NCI Genomic Data Commons portal.
Organization: bioconductor
Home Page: http://bioconductor.github.io/GenomicDataCommons/
cancer,BioDynaMo is a high-performance and modular, agent-based simulation platform.
Organization: biodynamo
cancer,Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Organization: bmirds
Home Page: https://www.nature.com/articles/s41598-019-40041-7
cancer,Predicting Cell Health with Morphological Profiles
Organization: broadinstitute
cancer,Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Organization: cbica
Home Page: https://www.cbica.upenn.edu/captk
cancer,Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
Organization: cnio-bu
cancer,Putting machine learning in the hands of cancer biologists
Organization: cognoma
Home Page: http://cognoma.org/
cancer,An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
Organization: cri-iatlas
Home Page: https://www.cri-iatlas.org
cancer,3D hotspot mutation proximity analysis tool
Organization: ding-lab
cancer,Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
Organization: fets-ai
Home Page: https://www.fets.ai
cancer,Building classifiers using cancer transcriptomes across 33 different cancer-types
Organization: greenelab
cancer,Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
Organization: greenelab
cancer,Training and evaluating a variational autoencoder for pan-cancer gene expression data
Organization: greenelab
cancer,Web client for CIViC: Clinical Interpretations of Variants in Cancer
Organization: griffithlab
cancer,Backend Server for CIViC Project
Organization: griffithlab
cancer,CNN histopathologic tumor identifier.
User: gsurma
Home Page: https://gsurma.github.io
cancer,List of IARC bioinformatics nextflow pipelines
Organization: iarcbioinfo
cancer,Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
User: jakelever
Home Page: http://bionlp.bcgsc.ca/cancermine/
cancer,A Python-Tensorflow neural network for classifying cancer data
User: jhole89
cancer,Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
User: jiezheng-shanghaitech
cancer,Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Organization: karchinlab
Home Page: http://2020plus.readthedocs.org
cancer,Flask App for Cancer Donation Portal using basic Python, SQLite3, HTML, CSS and Javascript
User: kaushikjadhav01
cancer,A list of web-based interactive biological data visualizations.
User: keller-mark
cancer,Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
User: kritikaparmar-programmer
cancer,It was built a web application as a step forward in building a 3D recommendation system.
User: luisdrita
Home Page: https://warcraft12321.github.io/HyperFoods
cancer,P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
User: marakeby
cancer,MATLAB implementation to segment breast lesions in ultrasound images (ICIAR 2016)
User: mawady
cancer,Python package to annotate and visualize gene fusions.
User: murphycj
Home Page: https://www.agfusion.app
cancer,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
cancer,Detect and visualize target mutations by scanning FastQ files directly
Organization: opengene
cancer,Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Organization: oshlack
cancer,Opensource radiation treatment planning system in Python [AAPM'23]
Organization: portpy-project
cancer,A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
User: ramhiser
cancer,A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
User: seandavi
cancer,This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
User: shobhitsrivastava-ds
Home Page: https://myml-mtapp.herokuapp.com/
cancer,Cancer Predisposition Sequencing Reporter (CPSR)
User: sigven
Home Page: https://sigven.github.io/cpsr/
cancer,Cancer-dedicated gene set interpretation
User: sigven
Home Page: https://sigven.github.io/oncoEnrichR/
cancer,Personal Cancer Genome Reporter (PCGR)
User: sigven
Home Page: https://sigven.github.io/pcgr
cancer,Fast and accurate gene fusion detection from RNA-Seq data
User: suhrig
cancer,Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
User: tariqdaouda
Home Page: http://pygeno.iric.ca
cancer,A basic framework for pulmonary nodule detection and characterization in CT
User: taznux
Home Page: https://qradiomics.wordpress.com/portfolio/lung-image-analysis-framwork/
cancer,Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
User: yifengtao
cancer,Multi-task deep learning framework for multi-omics data analysis
User: zhangxiaoyu11
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