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aml31

Resource website for the AML31 publication

anchor_huiming_etal_2023

Code for computational workflows and analyses relating to "Computational prediction of MHC anchor locations guide neoantigen identification and prioritization"

angular-ui-router-civic

Fork of ui-router with fix for uiSrefActive and nested routes applied

ast17

CSHL Advanced Sequencing Technologies and Applications 2017 Course Directory

bga-interface-projects

Monorepo for user-interface projects of the Bioinformatics and Genome Analytics group at MGI

bigmhc

BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatic-workflows

CWL workflows for bioinformatic analysis

brain-tumor-heterogeneity

Code for figures

cancer-hotspots

Predicting neoantigens from cancer hotspots

civic-api-client

Example tools using the CIVIC API

civic-api-docs

Beautiful static documentation for your API

civic-client

Web client for CIViC: Clinical Interpretations of Variants in Cancer

civic-curation

For CIViC curation issues that do not directly involve code changes

civic-docs

Source code for the civicdb.org docs

civic-mapper

Tool to map variants to CIViC entries

civic-meeting

Repo for advertising and organizing CIViC unconference/meeting activities

civic-panel

Tools for selecting targets for and designing panel for various assays

civic-server

Backend Server for CIViC Project

civic-v2

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

civic2clinvar

extraction of CIViC variants into the clinvar submission format

civic_pm

Open-sourced Precision Medicine Pathway using CIViC Annotations

civic_svi_course

A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

civicpy

A python interface for the CIViC db application

command_line_bootcamp

:computer: command-line bootcamp adventure in your browser

convert_zero_one_based

Python CLI to convert between zero and one based genomic coordinate systems

crc_biomarkers

Repo for analysis of CRC biomarkers from stool samples

deepimmuno

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

deepneo

identification of immunogenic neoepitopes

deepsvr