greenelab Goto Github PK
Name: Greene Laboratory
Type: Organization
Bio: Greene Laboratory at the University of Colorado Anschutz
Twitter: greenescientist
Location: Aurora, CO
Name: Greene Laboratory
Type: Organization
Bio: Greene Laboratory at the University of Colorado Anschutz
Twitter: greenescientist
Location: Aurora, CO
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
A pipeline to generate a compendia of bacterial and archaeal RNA-seq data
Code to explore the unquantified fractions of refine.bio RNA-seq data sets
Building ADAGE models using Pseudomonas aeruginosa RNA-seq data. See https://github.com/georgiadoing/seqADAGE for initial work on this application, and https://bitbucket.org/greenelab/eadage/src/master/ for original eADAGE code
Determine whether some of the results genereated in greenelab/core-accessory-interactome can be regenerated using abundance-weighted FracMinHash sketches instead of gene counts
Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al ยท mSystems ยท 2016
The backend for Adage web app
The Adage web app, a tool to explore gene expression data and discover new insights from machine learning models
An R package (ADAGEpath) to perform signature analysis using methodology from the ADAGE manuscript
Repository associated with Song et al. manuscript describing a Network-wide Association Study of ADNI Cohorts.
Using BuDDI to integrate cfDNA and ATAC data from AML samples to identify cell of origin
Annotating Rxiv preprints in an automated fashion
This manuscript covers the annorxiver project.
A python package that consists of functions that process publicly available annotated sets of genes
Assets (logos, icons, animations, sounds, etc) for use in the Greene Lab
Backup a GitHub user's or organization's repos and wikis
BioBombe: Sequentially compressed gene expression features enhances biological signatures
A scraper which tries to generate conda recipes for bioconductor and other needed R packages.
A literature review of biologically constrained machine learning models
Detecting Biomedical Relationships using Word2vec On Pubtator Central
Logos and other brand assets for the Greene Lab organization
Transfer learning for uncovering the biology underlying rare disease
BuDDI model implementation
Analysis notebooks for the BuDDI manuscript
repository for two projects from the Colorado Biomedical Informatics Summer Fellowship Program
Test Fork
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.