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cimr

tool for continuously integrated meta-resource

cimr-d

client to the cimr-d database for continuous integration and analysis using cimr

circadian-clock-modulators

Network analysis of hits from a screen of circadian clock modulating compounds

common-microbes

Identifying commonly found microbes

compbio-edi

Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.

computational-reagents

Rigor, Reproducibility, Transparency, and Reagent Validity for Computational Biologists

connectivity-search-analyses

hetnet connectivity search research notebooks (previously hetmech)

connectivity-search-backend

Django backend for hetnet connectivity search

connectivity-search-frontend

Frontend code for connectivity search (formerly "Hetmech")

connectivity-search-manuscript

Manuscript describing Hetnet Connectivity Search

continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

continuous_analysis_brainarray

Continuous Analysis Example - Performing Differential Expression Analysis with Custom Chip Description Files (CustomCDF)

continuous_analysis_phylo

A simple phylogenetic tree building example of Continuous Analysis

continuous_analysis_rnaseq

Example of how continuous analysis can be used for RNA-Seq differential expression.

core-accessory-interactome

Investigating the functional relationship between P. aeruginosa core and accessory genes.

covid19-review

A collaborative review of the emerging COVID-19 literature. Join the chat here:

crossref

Download metadata for all DOIs using the Crossref API

cyclegan_gene_expression

Experimenting using cycleGAN to transform P. aeruginosa gene expression data between planktonic and biofilm conditions.

czi-cancer-data

Downloading and processing pipelines used for single cell gene expression assays of human tumor biopsies

czi-hca-report

A repository that collects our findings from our efforts under the CZI/HCA project.

czi-latent-assessment

Supplement to the report in https://greenelab.github.io/czi-hca-report/

czi-rfa

Application to "Collaborative Computational Tools for the Human Cell Atlas" https://chanzuckerberg.com/initiatives/rfa

czi-seed-rfa

An application that is responsive to CZI's RFA.

daps

Denoising Autoencoders for Phenotype Stratification

deconvolution_pilot

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

disease_ontology_geneset

disparities_opinion

django-genes

A Django package to represent genes

django-organisms

A Django package to represent organisms