bcgsc Goto Github PK
Name: BC Cancer Canada's Michael Smith Genome Sciences Centre
Type: Organization
Bio: Sequencing Centre for Genomics and Bioinformatics Research
Location: Vancouver, BC, Canada
Blog: http://www.bcgsc.ca/
Name: BC Cancer Canada's Michael Smith Genome Sciences Centre
Type: Organization
Bio: Sequencing Centre for Genomics and Bioinformatics Research
Location: Vancouver, BC, Canada
Blog: http://www.bcgsc.ca/
aaHash repo for manuscript
:microscope: Assemble large genomes using short reads
:baby_bottle: Assemble the Genome in a Bottle sequencing data
ABySS-Connector: Connecting Paired Sequences with a Bloom Filter de Bruijn Graph
Visualize genome sequence assemblies
Utilities to assemble an organelle genome using ABySS
Draft genome completeness assessment using hash based approach
De novo antimicrobial peptide sequence generation with recurrent neural networks
Attentive deep learning model for antimicrobial peptide prediction
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
ARCHIVED 🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads. ARCS/ARKS projects have been consolidated: https://github.com/bcgsc/arcs
Create Bloom filters for a given reference and then use it to categorize sequences
These scripts provide a fast, memory-efficient method for estimating the percent sequence identity between two genomes using a probabilistic data structure called a Bloom filter
:microscope: Bioinformatics Technology Lab, Genome Sciences Centre
The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
Bioinformatics Technology Lab common code library
This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies
Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
Supplementary material for ChopStitch paper
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
DIDA Project
:bird: Seasonal and sex-dependent gene expression in emu fat tissues
Character-level language model for draft genome assembly gap-filling
command line interface for ggplot
GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler
Linear-time de novo Long Read Assembler
GraphViz scripts
GUM: Group, User Manager for LDAP
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