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License: MIT License
Method to optimally select samples for validation and resequencing
License: MIT License
Dear all,
When I set the number of samples to select to 100, it returns me only 15 samples and with the information (No more samples to select from), does this mean that the selected 15 samples can represent the whole genetic diversity?
Best regards,
Zheng zhuqing
Dear all,
Can we use this tool to select an optimal subset of samples that collectively contain the largest number of distinct variants when the input is the population SNP vcf file? In my mind, it should be Ok. Thus, I have tried with following command (SVCollector greedy SNP.vcf -1 20 1 result
), the output is as follows. My SNP.vcf contains about ~80,000 SNPs, I cannot understand what does the number in each column mean?
Sample #SVs #_SVs_captured SVs_captured
PPOOOST210163309 13830.649556 13830.649556 0.817167
YYOOOST210129913 1748.636723 15579.286278 0.920483
Y6550106371 594.960513 16174.246792 0.955635
Looking forward to your reply, thanks.
Sincerely yours,
Zheng zhuqing
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