Topic: short-reads Goto Github
Some thing interesting about short-reads
Some thing interesting about short-reads
short-reads,TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria
User: alexjisa
short-reads,🍶 Genome assembly with short sequence reads
Organization: bcgsc
short-reads,Targeted Assembly of Short Reads
Organization: bcgsc
short-reads,Short read mapping and variant calling
User: carolinapb
short-reads,Genotyping of segregating mobile elements insertions
User: clemgoub
short-reads,GateSeeder is the first near-memory CPU-FPGA co-design for alleviating both the compute-bound and memory-bound bottlenecks in short and long-read mapping. GateSeeder outperforms Minimap2 by up to 40.3×, 4.8×, and 2.3× when mapping real ONT, HiFi, and Illumina reads, respectively.
Organization: cmu-safari
short-reads,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
short-reads,Nextflow pipeline for short-read alignment
Organization: digenoma-lab
short-reads,Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities
User: djfeistel
Home Page: https://github.com/djfeistel/SEWAGE
short-reads,A sequence-read simulator program for NGS
User: guillaume-gricourt
short-reads,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
short-reads,Evolutionary genomics of chromosomal inversions in Atlantic herring
User: mafaldasferreira
short-reads,VStrains is a de novo approach for reconstructing strains from viral quasispecies.
Organization: metagentools
short-reads,A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/germline/
short-reads,A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/structural/
short-reads,A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Organization: nf-core
Home Page: https://nf-co.re/detaxizer
short-reads,FQSqueezer - FASTQ compressor based on k-mer statistics
Organization: refresh-bio
short-reads,Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
Organization: unipept
short-reads,A flexible complex genome rearrangement simulator for short and long reads
Organization: xjtu-omics
short-reads,A scalable variant calling and benchmarking framework supporting both short and long reads.
User: yjx1217
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