Topic: nextflow-pipeline Goto Github
Some thing interesting about nextflow-pipeline
Some thing interesting about nextflow-pipeline
nextflow-pipeline,Nextflow pipeline used to count expression on target-RNA experiments.
User: a-hr
nextflow-pipeline,Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
User: amchakra
nextflow-pipeline,A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
User: angelovangel
nextflow-pipeline,A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
User: asadprodhan
nextflow-pipeline,Template for creating Nextflow DSL2 pipelines
Organization: australianbiocommons
nextflow-pipeline,Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
Organization: bccdc-phl
nextflow-pipeline,Nextflow wrapper for the dragonflye assembler, with additional QC
Organization: bccdc-phl
nextflow-pipeline,Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
User: bguo068
nextflow-pipeline,Nextflow pipeline for plasmodium SNP calling
User: bguo068
nextflow-pipeline, Nextflow pipeline for analysis of direct RNA Nanopore reads
Organization: biocorecrg
Home Page: https://biocorecrg.github.io/master_of_pores/
nextflow-pipeline,Shotgun metagenomics pipeline to process microbiome samples
Organization: biosustain
nextflow-pipeline,Nextflow pipeline for MS-DAP, a downstream pipeline to generate statistical reports for MS data
Organization: biosustain
nextflow-pipeline,Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
User: birgitrijvers
nextflow-pipeline,nextflow RNAseq pipeline for GG02
User: bixbeta
nextflow-pipeline,This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.
Organization: bu-isciii
nextflow-pipeline,NeoFlow: a proteogenomics pipeline for neoantigen discovery
Organization: bzhanglab
nextflow-pipeline,Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Organization: cellgeni
nextflow-pipeline,A containerized nextflow pipeline designed to annotate prokaryote genomes.
User: chadfibke
nextflow-pipeline,A nextflow pipeline which executes treemix on a population of interest
Organization: cnr-ibba
nextflow-pipeline,A Nextflow pipeline to experiment with DSL2 + Zero Mess
Organization: eipm
nextflow-pipeline,Bases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.
Organization: elembio
nextflow-pipeline,This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
Organization: ghga-de
nextflow-pipeline,PLANTOGEN-A, an automated genome assembly pipeline designed to assemble symbiont microorganisms genome from Oxford Nanopore (ONT) data.
User: giulia-calia
nextflow-pipeline,Nextflow pipeline for genome annotation of protein-coding genes
Organization: guigolab
nextflow-pipeline,
User: icaromsc
nextflow-pipeline,Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
Organization: inmegen
Home Page: https://serviciosbio.inmegen.gob.mx/
nextflow-pipeline,Analyse combined miRNA/mRNA reads produced using Combo-Seq kit
User: jadedavis5
nextflow-pipeline,A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
User: jbris
Home Page: https://jbris.github.io/nextflow-graph-machine-learning/
nextflow-pipeline,Working through NextFlow tutorials. See https://github.com/nextflow-io/training
User: jbris
nextflow-pipeline,Workflow for MAG quality assessment and taxonomical annotation.
User: jeffe107
nextflow-pipeline,Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
User: jhayer
nextflow-pipeline,Misc. Nextflow scripts
User: jlboat
nextflow-pipeline,Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.
User: jlp-bioinf
nextflow-pipeline,NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads
User: joanmarticarreras
nextflow-pipeline,This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics
User: jtremblay
Home Page: https://jtremblay.github.io
nextflow-pipeline,Python library to execute batches of jobs using nextflow.
User: kirilenkobm
nextflow-pipeline,A proof of concept daisy-chaining Nextflow workflows
User: mahesh-panchal
nextflow-pipeline,A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.
User: midnighter
nextflow-pipeline,A collection of unexpected challenges and learnings with nextflow and nf-core.
User: midnighter
Home Page: https://midnighter.github.io/nextflow-gotchas/
nextflow-pipeline,A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Organization: nf-cmgg
Home Page: https://nf-cmgg.github.io/structural/
nextflow-pipeline,Nextflow pipeline to assemble genomes from nanopore reads.
User: nschan
nextflow-pipeline,TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Organization: palmuc
nextflow-pipeline,Pipeline for SNP Calling Created in Nextflow management system for purposesof testing the advantages of managed systems vs native applications in variant calling. The paper created and published one day is titled "NextFlow vs. plain Bash: Different Approaches to the Parallelisation of SNP Calling from the Whole Genome Sequence Data"
User: paq88
Home Page: https://academic.oup.com/nargab/article/6/2/lqae040/7659592
nextflow-pipeline,Nextflow pipeline for extracting and counting clonal barcodes
Organization: phipsonlab
Home Page: https://phipsonlab.github.io/NextClone/
nextflow-pipeline,A DEEP LEARNING APPROACH TO PREDICTING POTENTIAL VIRUS SPECIES CROSSOVER USING CONVOLUTIONAL NEURAL NETWORKS AND VIRAL PROTEIN SEQUENCE PATTERNS
User: rudolph-afk
nextflow-pipeline,Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
Organization: salvadorlab
nextflow-pipeline,The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.
User: shliamin
Home Page: https://shliamin.github.io/NGS-pipeline/
nextflow-pipeline,Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
User: sufyazi
nextflow-pipeline,A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
Organization: torch-consortium
Home Page: https://doi.org/10.1371/journal.pcbi.1011648
nextflow-pipeline,A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
User: vickylaram
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