Topic: metatranscriptomics Goto Github
Some thing interesting about metatranscriptomics
Some thing interesting about metatranscriptomics
metatranscriptomics,Pipeline for metagenome and metatranscriptome joint assembly
Organization: ablab
metatranscriptomics,Comparative Metatranscriptomics Workflow
User: anwarmz
metatranscriptomics,Open-source opinionated Galaxy-based framework for microbiota analysis
Organization: asaim
Home Page: http://asaim.readthedocs.io/
metatranscriptomics,A pipeline for TotalRNA analysis
Organization: au-envs-bioinformatics
Home Page: https://github.com/AU-ENVS-Bioinformatics/TotalRNA-Snakemake/wiki
metatranscriptomics,Code bank for analysis performed in the manuscript" "The capacity to produce hydrogen sulfide (H2S) via cysteine degradation is ubiquitous in the human gut microbiome"
User: dombraccia
metatranscriptomics,Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
User: erikrikarddaniel
metatranscriptomics,MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
User: fei38750
metatranscriptomics,ViewVir - A pipeline to visualize viral metatranscriprome data
User: gabrielvpina
metatranscriptomics,a function to generate the hidden layers from the given fasta and the expression files. it takes the replicate columns and then calculates the expression and length as a hidden layer. Applying to the transcriptomics, meta transcriptomics and other expression datasets
User: gauravearn
metatranscriptomics,Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
Organization: genomeud
metatranscriptomics,A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
User: hermidalc
metatranscriptomics,
User: icaromsc
metatranscriptomics,A tool for representing genomic potential and transcriptomic expression into KEGG pathways
User: iquasere
metatranscriptomics,Meta-Omics Software for Community Analysis
User: iquasere
metatranscriptomics,A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
User: jmpolinski
Home Page: https://www.frontiersin.org/articles/10.3389/fmars.2023.1219784/full
metatranscriptomics,Interactive visualisation and data annotation for meta-omics data
User: kevinmcdonnell6
metatranscriptomics,An analysis and visualization platform for 'omics data
Organization: merenlab
Home Page: http://merenlab.org/software/anvio
metatranscriptomics,This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
User: metavannier
metatranscriptomics,Metatranscriptomics workflow
Organization: microbiomedata
metatranscriptomics,Meta Transcriptomic study of Nicotiana benthamiana to look for high expressed locations in the genome.
User: miriammarins
metatranscriptomics,gNOMO2 allows integrated multi-omics analyses of microbiomes
User: muzafferarikan
metatranscriptomics,
User: n-heck-1
metatranscriptomics,Taxonomic classification of metagenomic contigs
Organization: nbisweden
metatranscriptomics,Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Organization: nf-core
Home Page: https://nf-co.re/metatdenovo
metatranscriptomics,Metagenomics and Metatranscriptomics pipeline
Organization: openomics
Home Page: https://openomics.github.io/metamorph/
metatranscriptomics,:cake: Per sequence functional classification and taxonomic assignments
Organization: pnnl-compbio
Home Page: https://pnnl-compbio.github.io/perseq/
metatranscriptomics,The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
User: poursalavati
metatranscriptomics,Statistical package for metaome denovo assembly results.
User: raw-lab
metatranscriptomics,Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
User: rjstevick
metatranscriptomics,Study of farmed oysters and nitrogen cycling in Point Judith Pond, RI. Scripts for analysis of 16S rRNA amplicon and metatranscriptomic data.
User: rjstevick
metatranscriptomics,Repository associated with Jenior ML, et al. (2018). mSphere.
Organization: schlosslab
metatranscriptomics,Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
User: silentgene
metatranscriptomics,sensitive and precise assembly of short sequencing reads
Organization: soedinglab
Home Page: https://plass.mmseqs.com
metatranscriptomics,SortMeRNA: next-generation sequence filtering and alignment tool
Organization: sortmerna
Home Page: https://sortmerna.readthedocs.io
metatranscriptomics,Nextflow translation for SAMSA2 metatranscriptomics pipeline. Tailored for running on WEHI Milton.
Organization: wehi-researchcomputing
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