ablab Goto Github PK

basespace_gatk_app

Repo for creating BaseSpace Apps

bioconda-recipes

Conda recipes for the bioconda channel.

covid19_variation_analysis

external-tools

graphamr

Antibiotic prediction from metagenome assembly graphs

holy-build-box

System for building cross-distribution Linux binaries

hormon

isoquant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

metagt

Pipeline for metagenome and metatranscriptome joint assembly

metarna

nerpa

npdtools

Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data

npvis

Interactive visualizer for MS/MS fragmentation of natural products

orf-search

ORF search on assembly graphs

plasmidverify

plasmidVerify: plasmid contig verification tool

platform_comparison

Comparing Platforms

quast

Genome assembly evaluation tool

quast-website

Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

quast_snakemake

rectangles

rnaquast

Quality assessment of de novo transcriptome assemblies from RNA-Seq data

spades

SPAdes Genome Assembler

stringdecomposer

Tool for decomposition centromeric assemblies and long reads into monomers

tagfinder

tagfinder05

tandemtools

Tool for assessing/improving assembly quality in extra-long tandem repeats

veritymap

viralcomplete

viralComplete: BLAST-based viral completeness verification

viralverify

viralVerify: viral contig verification tool

y-tools