hermidalc Goto Github PK
Name: Leandro Hermida
Type: User
Bio: cancer data science / bioinformatics / computational biology / genomics
Location: Pittsburgh, PA
Leandro Hermida's Projects
agamemnon
Accurate metagenomic/metatranscriptomic analysis pipeline
cancer-mbiome-ict-net
Cancer microbiome immune checkpoint therapy network analysis
cclasso
CCLasso: Correlation Inference for Compositional Data through Lasso
confero
Confero Project Repository
covid_metabolism
Metabolic modeling of SARS-CoV-2 infection and antiviral target prediction
csi-microbes-identification
Code for the identification step for CSI-Microbes
dragonfish
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
feature-id-mapping
Feature ID Mapping Script Repository
fuge-docs
Functional Genomics Experiment (FuGE) Docs
fuge-ejb3-stk
Functional Genomics Experiment (FuGE) EJB3 STK
fuge-hibernate-stk
Functional Genomics Experiment (FuGE) Hibernate STK
fuge-xsd-stk
Functional Genomics Experiment (FuGE) XSD STK
fuzzy-kmer-seq-aligner
Fuzzy k-mer local sequence aligner inspired by Healy J, Chambers D. Approximate K-mer Matching Using Fuzzy Hash Maps (2014) though with many changes and enhancements
gp-sym-regr-bio
Genetic programming symbolic regression vs standard supervised machine learning methods for prediction in biological data
htslib
C library for high-throughput sequencing data formats
humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
jams_bw
Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)
lifelines
Survival analysis in Python
mimas
Multiomics Information Management and Annotation System
ml-lung-cancer
ML prediction in lung cancer
ml-resp-cancer-mbiome
ML prediction of drug response in cancer using microbiome data
ml-resp-cancer-xcell-gex
ML prediction of drug response in cancer from xCell and gene expression data
nci-ctd2-dashboard
NCI CTD^2 Dashboard
nci-ctd2-dashboard-tmpl-helper
NCI CTD^2 Dashboard Template Helper
nci-ocg-dcc
NCI OCG DCC Repository
nci-target-circos
NCI TARGET Circos Application
perl-rna-seq-star
STAR + HTSeq + featureCounts RNA-seq processing pipeline environment and wrapper script, including SRA query, download, and caching functionality and useful reuse/restart features
pufferfish
An efficient index for the colored, compacted, de Bruijn graph
rna-seq-star-gex
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
rpy2-feedstock
A conda-smithy repository for rpy2.
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