Topic: pangenomics Goto Github
Some thing interesting about pangenomics
Some thing interesting about pangenomics
pangenomics,An accurate aligner of long reads to a variation graph, based on co-linear chaining
Organization: algbio
pangenomics,Pangenomic Statistical analysis in R (pasaR)
User: ampatzia
pangenomics,Long-read aligner to pangenome graphs
Organization: at-cg
pangenomics,AMR/VF LGT focused bacterial genomics analysis workflow
Organization: beiko-lab
Home Page: https://beiko-lab.github.io/arete/
pangenomics,An LLM-based pangenomics chatbot integrated into the PanKB website.
Organization: biosustain
Home Page: http://pankb.org/ai_assistant
pangenomics,Pangenome Analysis in Prokaryotes Lesson
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/pangenomics/
pangenomics,Introduction to Python: Pangenomics
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/pangenomics-python/
pangenomics,Topological data analysis for Comparative Genomics
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/topological-data-analysis/
pangenomics,Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
User: chosenobih
pangenomics,generating hardware accelerators for pangenomic graph queries
Organization: cucapra
pangenomics,A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
User: darcyabjones
pangenomics,The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
User: downingtim
pangenomics,A Snakemake workflow for microbial pangenomics analyses.
User: emmaewade
pangenomics,Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
User: faylward
pangenomics,This repo contains scripts used for the identification of phylogenetic marker genes (PMGs) in assembled metagenomic data. Code is provided for benchmarking this method on sequenced genomes as well as running this analysis on metagenomic data. These scripts are in development.
User: faylward
pangenomics,pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
User: gauravcodepro
pangenomics,Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
User: gcbl-niab
pangenomics,Optimal sequence-to-graph alignment with recombinations using wavefront algorithm.
User: ifoxz17
Home Page: https://github.com/AlgoLab/RecGraph
pangenomics,This repository contains the files from my master thesis project required to conduct a whole-genome analysis of haploblocks in wheat based on pairwise comparisons between assemblies. This is based on a previous method (https://doi.org/10.1038/s42003-020-01413-2), but focuses on the the quality of the pairwise comparisons to call haplotypes.
User: jamonterotena
pangenomics,Alignment of Pangenome Graphs with Ricci Flow
User: jorgeavilacartes
pangenomics,Functions for working with NCBI's Pathogen Detection data
User: jtrachsel
Home Page: https://jtrachsel.github.io/pdtools/
pangenomics,Federating genomes with love (and synteny derived from functional annotations)
Organization: legumeinfo
Home Page: https://gcv.legumeinfo.org/
pangenomics,Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).
User: lucaparmigiani
Home Page: https://doi.org/10.24072/pcjournal.415
pangenomics,GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
Organization: marschall-lab
pangenomics,Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Organization: marschall-lab
pangenomics,An analysis and visualization platform for 'omics data
Organization: merenlab
Home Page: http://merenlab.org/software/anvio
pangenomics,PAPi (Pangenome Analysis Pipeline)
User: michkam89
pangenomics,Construct and Analyze the North American Vitis pangenome
User: noecochetel
pangenomics,A pipeline for construction and graphical visualization of annotated pangenome networks.
User: peng-ye
pangenomics,Scripts for Hill et al. (in review) 🌾
User: rowena-h
pangenomics,Library to parse, edit and handle in memory GFA graphs
User: tharos-ux
Home Page: https://tharos-ux.github.io/pangenome-notes/
pangenomics,Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
User: tharos-ux
Home Page: https://tharos-ux.github.io/pangenome-notes/
pangenomics,Analysis of shared parts of a pangenome
User: tharos-ux
pangenomics,Pangenome Mutation-Annotated Networks
Organization: turakhialab
Home Page: https://turakhia.ucsd.edu/panman/
pangenomics,Compare pangenomes using ED-Strings
User: urbanslug
pangenomics,Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
User: vinuesa
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.