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algenomics

Library to understand genomics, with naming related to biology.

alpang-hackaton

Workflow to use GraphAligner and PanAligner

alpang_hackathon

ALPACA/PANGAIA ANNUAL WORKSHOP - Hackathon

api-cnn-fcgr

awesome-graph-classification

A collection of important graph embedding, classification and representation learning papers with implementations.

barbar

Progress bar for deep learning training iterations💈

bash-utilities

bash scripts with some functionalities

bioconda-recipes

Conda recipes for the bioconda channel.

blog

A customizable Jekyll Portfolio theme which supports blogging.

cnn-benchmarks

Benchmarks for popular CNN models

convolutional-networks

A series of files to learn deep learning

cougar-s

delucs

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

django3

Testing and increasing knowledge

dl-forecast

Deep Learning worflow for forecasting using RNN

dl-supervised-learning-geof

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

eat_tensorflow2_in_30_days

Tensorflow2.0 🍎🍊 is delicious, just eat it! 😋😋

embedding-msa

Embedding space for MSAs to query similar fastq files from k-mer distributions

fasttext

Library for fast text representation and classification.

fcgr-var

Variational Autoencoder with FCGR

fcgr2seq

reconstruct sequence from FCGR with deep learning

hilbert-cnn

An image representation based convolutional network for DNA classification

k-means-waveletemd

K-means using wavelet Earth Mover's Distance

label-images-with-python

Manual labelling of images saved in a local folder using python: multi-class only.

make_prg

Code to create a PRG from a Multiple Sequence Alignment file

making-my-own-executable-python

Define your own .ExecutableExtension to run python code (and others) with just one click

mldsp

Machine Learning with Digital Signal Processing

mof-search

BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours