Topic: mobile-genetic-elements Goto Github
Some thing interesting about mobile-genetic-elements
Some thing interesting about mobile-genetic-elements
mobile-genetic-elements,AMR/VF LGT focused bacterial genomics analysis workflow
Organization: beiko-lab
Home Page: https://beiko-lab.github.io/arete/
mobile-genetic-elements,code repo for mobileOG-db
User: clb21565
mobile-genetic-elements,Tn3 Transposon/Toxin Finder
User: danillo-alvarenga
mobile-genetic-elements,Composite Transposon Finder
User: danillo-alvarenga
mobile-genetic-elements,Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
User: fmalmeida
Home Page: https://bacannot.readthedocs.io/en/latest/
mobile-genetic-elements,Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
User: jlmaier12
mobile-genetic-elements,A reference-free statistical approach to diversity-generating & mobile genetic element discovery
User: jordiabante
mobile-genetic-elements,codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Organization: kalan-lab
mobile-genetic-elements,zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Organization: kalan-lab
mobile-genetic-elements,Tool intended to pull out sequences and annotations between insertion sites specified by the user.
User: milnus
mobile-genetic-elements,Metabundance: Investigating ARG abundance in metagenomes and linking them to MGEs
User: nali321
mobile-genetic-elements,A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
User: rawalteam
mobile-genetic-elements,Automated detection of unfixed mobile genetic elements in long read DNA sequencing data
User: vhfsantos
mobile-genetic-elements,An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
User: wanyuac
mobile-genetic-elements,skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequences using average nucleotide identity (ANI)
User: youkaifromaccounting
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