Topic: antibiotic-resistance Goto Github
Some thing interesting about antibiotic-resistance
Some thing interesting about antibiotic-resistance
antibiotic-resistance,Antimicrobial resistance prediction app for KBase
User: aldro61
antibiotic-resistance,Interpretable genotype-to-phenotype models with rule-based classifiers
User: aldro61
antibiotic-resistance,Python package to interact with the PATRIC database (https://www.patricbrc.org)
User: aldro61
antibiotic-resistance,An examination of genomic resistance and virulence of Escherichia marmotae dentified in deer faeces Portumna, Galway.
User: amyobro
antibiotic-resistance,This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.
User: anna-pico
antibiotic-resistance,A tool for AMR gene family prediction, simple and ML-based
User: astrabert
Home Page: https://huggingface.co/as-cle-bert/resistBERT
antibiotic-resistance,Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Organization: bccdc-phl
antibiotic-resistance,ARG normalization by mapping to the ARO ontology.
Organization: bigdatabiology
antibiotic-resistance,Antibiotic Resistance in Metagenomes
User: boulund
antibiotic-resistance,Visualise your isolate's antibiotic resistance profile
User: caileancarter
antibiotic-resistance,
User: caozhichongchong
antibiotic-resistance,Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
User: chris-rands
antibiotic-resistance,Reproducible scripts for the Su et al (2020) paper.
User: crsl4
antibiotic-resistance,Data, source code and scripts for BIORXIV/2019/643585v3
User: dannagifford
Home Page: https://www.biorxiv.org/content/10.1101/643585v3
antibiotic-resistance,A simple simulator that shows the easy way how an antibiogram works
User: davidegat
antibiotic-resistance,An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.
User: davidegat
antibiotic-resistance,Desktop tool for microbial genome annotation and gene detection
User: dmnfarrell
antibiotic-resistance,Citizen science project investigating antibiotic resistance in wildlife. A collaboration between Macquarie University, Taronga Zoo and University of Sydney
Organization: faims
Home Page: https://twitter.com/mqscoop?lang=en
antibiotic-resistance,Curation of Antibiotic Resistance Genes by using crowdsourcing
User: gaarangoa
Home Page: https://bench.cs.vt.edu/argminer/
antibiotic-resistance,Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
User: gaarangoa
Home Page: http://bench.cs.vt.edu/argpore/home
antibiotic-resistance,Extract discriminatory ARGs from metagenomics samples
User: gaarangoa
antibiotic-resistance,Virulence and Antibiotic Resistance Genes used with JASEN pipeline at the university hospital of Linköping, Sweden.
Organization: genomic-medicine-linkoping
antibiotic-resistance,Early prediction of Antimicrobial Resistance (AMR) using Machine Learning
User: geovalexis
Home Page: https://geovalexis.github.io/ml-in-args/
antibiotic-resistance,Antibiotic Resistance Genes Finding
User: hossainlab
antibiotic-resistance,An optimal experimental design framework for accelerating knowledge discovery using gene expression data
Organization: ibpa
antibiotic-resistance,Java simulation of antibiotic resistance. Pretty cute.
User: jaeihn
antibiotic-resistance,Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
User: joycewang914
antibiotic-resistance,Interaction networks between antibiotic exposure, microbial factors and clinical features in nursing home patients influence the risk of catheter-associated urinary tract infection.
User: joycewang914
antibiotic-resistance,Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.
User: joycewang914
antibiotic-resistance,
User: jvelezmagic
Home Page: https://jvelezmagic.github.io/undergraduate_research_project/
antibiotic-resistance,Antibiotic discovery using graph deep learning, with Chemprop.
User: karolinagustavsson
antibiotic-resistance,PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
User: kiranjavkar
antibiotic-resistance,Simulator of Antibiotic Therapy Effects on the Dynamics of Bacterial Populations
User: kronopt
antibiotic-resistance,Natural language processing chatbot answering questions about antibiotics and antibiotic resistance
User: lasupernova
antibiotic-resistance,This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.
User: macyepell
Home Page: https://www.biorxiv.org/content/10.1101/2024.04.01.587590v1
antibiotic-resistance,An intelligent interface project targeted towards educating people of different ages about when and why to use antibiotic medication.
User: mbar0075
Home Page: https://isaacmuscat21.wixsite.com/intinterface-jim
antibiotic-resistance,This work is my final thesis for an undergraduate degree in computer science.
User: mufle123
antibiotic-resistance,Metabundance: Investigating ARG abundance in metagenomes and linking them to MGEs
User: nali321
antibiotic-resistance,AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
antibiotic-resistance,Data and code for Kimbell et al., 2021
User: newtonlabuwm
antibiotic-resistance,(Meta-)genome screening for functional and natural product gene sequences
Organization: nf-core
Home Page: https://nf-co.re/funcscan
antibiotic-resistance,Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
User: pianpianyouche
Home Page: https://github.com/pianpianyouche/plascad
antibiotic-resistance,Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.
Organization: pinheirogroup
Home Page: https://kinbiont.fuzue.org
antibiotic-resistance,A simple package for simulations of microbial growth experiments with realistic sources of error.
User: ryansmcgee
antibiotic-resistance,This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.
User: shliamin
Home Page: https://shliamin.github.io/Python-Genome-Assembler/
antibiotic-resistance,Simulating antibiotic resistant bacteria growth
User: tvlpirb
antibiotic-resistance,A resistome profiler for Graphing Resistance Out Of meTagenomes
User: will-rowe
antibiotic-resistance,ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
User: xinehc
antibiotic-resistance,Antibiotic Resistant Target Seeker (ARTS)
Organization: ziemertlab
Home Page: https://arts.ziemertlab.com/
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