Topic: rna-structure Goto Github
Some thing interesting about rna-structure
Some thing interesting about rna-structure
rna-structure,Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
User: amchakra
rna-structure,Trainable PyTorch framework for developing protein, RNA and complex models.
Organization: baaihealth
rna-structure,Software for predicting translation initiation rates in bacteria
Organization: barricklab
rna-structure,Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.
Organization: beam-labs
rna-structure,The landscape of RNA 3D structure modeling with transformer networks
Organization: bhattacharya-lab
rna-structure,Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
User: cgoliver
rna-structure,gRNAde: Geometric Deep Learning for 3D RNA inverse design
User: chaitjo
Home Page: https://arxiv.org/abs/2305.14749
rna-structure,CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
User: csfoo
rna-structure,Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
Organization: eternagame
rna-structure,:package: Structstrings: implementation of Biostrings to work with dot bracket annotations
User: felixernst
Home Page: https://felixernst.github.io/Structstrings/
rna-structure,Assemble2 allows you to design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera
User: fjossinet
Home Page: https://fjossinet.github.io/assemble2/
rna-structure,A JavaFX app to visualize RNA alignments from Rfam database.
User: fjossinet
rna-structure,A platform to do RNA science
User: fjossinet
Home Page: http://fjossinet.github.io/RNA-Science-Toolbox/
rna-structure,With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
User: fjossinet
Home Page: https://twitter.com/rnartist_app
rna-structure,A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
User: fjossinet
Home Page: https://twitter.com/rnartist_app
rna-structure,JavaFX widgets to visualize and manipulate RNA structures.
User: fjossinet
rna-structure,Translation Initiation coding region designer
Organization: gardner-binflab
Home Page: https://tisigner.otago.ac.nz
rna-structure,TISIGNER: Unleash the power of synthetic biology
Organization: gardner-binflab
Home Page: https://tisigner.com
rna-structure,Code related to TIsigner manuscript and webserver
Organization: gardner-binflab
Home Page: https://tisigner.otago.ac.nz
rna-structure,Final Project : Algorithms and Object-Oriented programming. Secodary structure of ARN molecules
User: gmagannadevelop
rna-structure,MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
User: hosnajabbari
rna-structure,RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
User: hosnajabbari
rna-structure,RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding
User: hosnajabbari
rna-structure, RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
User: hosnajabbari
rna-structure,R4RNA visualisation package. Designed for visualization of RNA-RNA interactions and Genomic information from HiC data.
User: ikarto
Home Page: https://e-rna.org/r-chie/
rna-structure,RNAelem is a tool for learning secondary structural motifs from a set of RNA sequences.
User: iyak
rna-structure,RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
User: jaswindersingh2
Home Page: https://apisz.sparks-lab.org:8443/spot-rna-sz.html
rna-structure,Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.
User: jlp-bioinf
rna-structure,Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments
User: jlp-bioinf
Home Page: https://CRAN.R-project.org/package=comradesOO
rna-structure,CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
Organization: kiharalab
Home Page: https://em.kiharalab.org/algorithm/CryoREAD
rna-structure,Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
User: kris96tian
Home Page: https://vine-mirage-roquefort.glitch.me
rna-structure,pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
User: mmagnus
Home Page: http://crystal.scb.uwa.edu.au/charlie/software/pdb-mode/
rna-structure,RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
User: mmagnus
rna-structure,Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
User: mmagnus
Home Page: http://ahsoka.u-strasbg.fr/rnapuzzlesv2
rna-structure,🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
User: mmagnus
Home Page: http://rna-tools.online
rna-structure,Script to facilitate the making of horizontal scripts
User: mooerslab
rna-structure,Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
User: mooerslab
rna-structure,PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.
User: mooerslab
rna-structure,Split and decompose structural RNA multiple sequence alignments
User: mtw
rna-structure,Construct atomistic (AA) model from Three-Interaction-Site (TIS) coarse-grained model of RNA/DNA
User: naotohori
rna-structure,Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.
User: noncodo
rna-structure,Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.
User: persalteas
Home Page: https://evryrna.ibisc.univ-evry.fr/evryrna/rnanet/rnanet_home
rna-structure,Visualising RNA-RNA interactions
User: pmenzel
Home Page: http://rth.dk/resources/rilogo
rna-structure,RNA Interaction Format (RIF) with reference implementations in C++, JavaScript, and Python
Organization: rnabioinfo
rna-structure,Bialignment of RNAs and proteins
User: s-will
Home Page: https://s-will.github.io/BiAlign/
rna-structure,LaRA 2: Lagrangian Relaxed structural Alignment
Organization: seqan
Home Page: https://seqan.github.io/lara/
rna-structure,Motif-based aligned RNA searcher
Organization: seqan
rna-structure,Analyse Nucleic Acids Structure and Simulations with baRNAba
Organization: srnas
rna-structure,RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
Organization: viennarna
Home Page: http://www.tbi.univie.ac.at
rna-structure,[Under Review] Knowledge from Large-Scale Protein Contact Prediction Models can be Transferred to the Data-Scarce RNA Contact Prediction Task
User: yiren-jian
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