pmenzel Goto Github PK

advent-of-code

bam-to-clusters

bioconda-recipes

Conda recipes for the bioconda channel.

biq

Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets

biq-manuscript-data

deeperseq

Browse FASTQs for SARS-CoV-2 genomes from the SRA/ENA

dht22-rpi

dircolors-solarized

This is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.

docker-backuppc

Docker container with BackupPC version 4.x/3.x based on Alpine distribution.

docker-micromamba-shiny

A minimal example for an R Shiny app inside a Docker container using R packages via conda-forge + micromamba

download-genbank-genomes

download-refseq-genomes

Perl script to download genomes within a clade from NCBI Refseq

filtlong

quality filtering tool for long reads

gh-actions

workflows for GitHub Actions

illumina-assembly-snake

Snakemake wrapper for bacterial genome assembly from Illumina reads.

kaiju-testdata

kiq

K-mer indexing and querying in RNA-Seq data

ls_colors

A collection of LS_COLORS definitions; needs your contribution!

ont-assembly-snake

Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools

ont-assembly-snake-testdata

open-data-registry

A registry of publicly available datasets on AWS

packcircles

C program for space-efficiently packing circles in a plane.

plot-samtools-depth

Plot output of samtools depth to postscript

pmenzel

r-ggstatsplot-feedstock

A conda-smithy repository for r-ggstatsplot.

raconnn

wrapper for running multiple assembly polishing rounds with racon

recipes

rilogo

Visualising RNA-RNA interactions

sarscov2-analysis-resources

sarscov2-inzidenzen